Wall clock time and date at job start Sun Mar 29 2020 22:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 120.00367 * 2 1 4 4 H 1.48504 * 109.46757 * 274.96653 * 3 2 1 5 5 H 1.48496 * 109.47222 * 34.96292 * 3 2 1 6 6 H 1.48493 * 109.47197 * 154.96683 * 3 2 1 7 7 C 1.40055 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99799 * 172.70352 * 7 2 1 9 9 C 1.46373 * 119.99874 * 352.70595 * 7 2 1 10 10 O 1.21687 * 120.00120 * 3.20908 * 9 7 2 11 11 N 1.34770 * 120.00129 * 183.20957 * 9 7 2 12 12 C 1.46931 * 120.62970 * 353.77389 * 11 9 7 13 13 C 1.53193 * 108.77612 * 233.62980 * 12 11 9 14 14 C 1.53040 * 109.31588 * 305.36582 * 13 12 11 15 15 C 1.53038 * 109.53522 * 61.36361 * 14 13 12 16 16 C 1.47001 * 120.61819 * 173.80054 * 11 9 7 17 17 H 1.08999 * 109.57757 * 246.14921 * 16 11 9 18 18 C 1.53001 * 109.62507 * 6.59286 * 16 11 9 19 19 O 1.42903 * 109.47170 * 290.83197 * 18 16 11 20 20 H 0.96996 * 119.99906 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.58598 * 113.84339 * 12 11 9 22 22 H 1.08994 * 109.58766 * 353.41760 * 12 11 9 23 23 H 1.09005 * 109.49722 * 185.41105 * 13 12 11 24 24 H 1.09002 * 109.49519 * 65.31822 * 13 12 11 25 25 H 1.09004 * 109.45987 * 301.34675 * 14 13 12 26 26 H 1.08990 * 109.45086 * 181.37915 * 14 13 12 27 27 H 1.08997 * 109.50180 * 58.58839 * 15 14 13 28 28 H 1.09007 * 109.49521 * 178.65170 * 15 14 13 29 29 H 1.08997 * 109.47196 * 50.83405 * 18 16 11 30 30 H 1.08999 * 109.46561 * 170.83237 * 18 16 11 31 31 H 0.96704 * 113.99332 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3833 2.1069 -1.3949 5 1 1.4947 2.6201 0.8023 6 1 3.5868 1.4120 0.5924 7 6 2.0069 -1.2129 0.0005 8 1 3.0804 -1.2167 -0.1182 9 6 1.2839 -2.4753 0.1620 10 8 0.0694 -2.4756 0.2372 11 7 1.9633 -3.6374 0.2275 12 6 3.4150 -3.6695 0.0027 13 6 3.7224 -4.7009 -1.0875 14 6 3.1175 -6.0502 -0.6930 15 6 1.5980 -5.9139 -0.5717 16 6 1.2657 -4.8968 0.5246 17 1 1.5971 -5.2789 1.4902 18 6 -0.2443 -4.6525 0.5572 19 8 -0.5741 -3.8602 1.6999 20 1 -0.4850 0.8400 -0.0004 21 1 3.9215 -3.9516 0.9258 22 1 3.7569 -2.6856 -0.3182 23 1 4.8020 -4.8041 -1.1966 24 1 3.2907 -4.3710 -2.0325 25 1 3.5312 -6.3677 0.2642 26 1 3.3558 -6.7916 -1.4555 27 1 1.1862 -5.5726 -1.5214 28 1 1.1654 -6.8807 -0.3141 29 1 -0.5470 -4.1274 -0.3487 30 1 -0.7657 -5.6080 0.6148 31 1 -1.5177 -3.6661 1.7847 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044382451.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:55 Heat of formation + Delta-G solvation = -74.564143 kcal Electronic energy + Delta-G solvation = -15229.063523 eV Core-core repulsion = 12703.965497 eV Total energy + Delta-G solvation = -2525.098026 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.89888 -35.70122 -35.10468 -32.45328 -31.54327 -30.93331 -26.50839 -25.35558 -23.39153 -21.44436 -20.27925 -18.71912 -16.44954 -15.99736 -15.57919 -14.85203 -14.32613 -13.85164 -13.81390 -13.19773 -12.98109 -12.75641 -12.10926 -11.75709 -11.47837 -11.13704 -11.04156 -10.94841 -10.53986 -10.43489 -10.38333 -10.16527 -9.88912 -9.59524 -8.90404 -8.57976 -7.08983 -6.94939 -6.06219 -4.52617 3.16820 3.24639 3.28310 4.14548 4.60453 4.66172 5.05594 5.28077 5.33295 5.53538 5.84773 5.90304 5.91992 6.02994 6.15868 6.20113 6.25588 6.30551 6.35927 6.52543 6.61057 6.64693 6.81071 7.09944 7.53253 7.72289 8.25330 8.47149 8.83471 9.11875 9.59040 10.68546 10.91192 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.011950 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.766693 B = 2342.624694 C = 2992.429090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.090 3.910 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.560 3.440 10 O -0.546 6.546 11 N -0.637 5.637 12 C 0.122 3.878 13 C -0.136 4.136 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.155 3.845 17 H 0.049 0.951 18 C 0.101 3.899 19 O -0.544 6.544 20 H 0.265 0.735 21 H 0.039 0.961 22 H 0.092 0.908 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.003 0.997 31 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 -7.936 -1.312 9.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.087 0.913 9 C 0.366 3.634 10 O -0.427 6.427 11 N -0.376 5.376 12 C -0.002 4.002 13 C -0.175 4.175 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.050 3.950 17 H 0.067 0.933 18 C 0.023 3.977 19 O -0.348 6.348 20 H 0.076 0.924 21 H 0.057 0.943 22 H 0.110 0.890 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.020 0.980 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.178 -7.841 -1.170 8.962 hybrid contribution 0.042 0.732 -0.091 0.739 sum 4.220 -7.110 -1.261 8.364 Atomic orbital electron populations 1.70006 1.06960 1.26926 1.35843 1.25658 0.94533 1.00022 0.92668 0.86463 0.80441 0.81977 0.78488 1.20006 1.20498 1.18927 1.20997 0.94092 0.89747 1.53468 0.91315 1.18083 0.87008 0.81861 0.76478 1.90507 1.13766 1.84641 1.53796 1.48160 1.06292 1.06360 1.76819 1.21397 0.83280 0.99715 0.95840 1.21973 0.99547 0.95764 1.00194 1.21436 0.95545 0.97239 1.00792 1.21875 0.96224 0.98459 0.99988 1.20778 0.92482 0.86041 0.95724 0.93331 1.21971 0.93181 0.90116 0.92446 1.86549 1.28448 1.74079 1.45696 0.92393 0.94319 0.89032 0.92112 0.91831 0.92403 0.92666 0.91741 0.92150 0.91051 0.97955 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.89 11.86 55.55 0.66 -22.23 16 2 C 0.09 2.53 5.49 -17.37 -0.10 2.44 16 3 Si 0.90 20.40 29.57 -169.99 -5.03 15.37 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -15.54 8.84 -35.63 -0.31 -15.85 16 8 H 0.07 1.81 5.73 -52.49 -0.30 1.51 16 9 C 0.56 15.99 7.34 -12.99 -0.10 15.90 16 10 O -0.55 -16.69 9.24 -20.00 -0.18 -16.88 16 11 N -0.64 -14.98 2.97 -166.81 -0.50 -15.48 16 12 C 0.12 2.38 6.31 -3.71 -0.02 2.36 16 13 C -0.14 -2.15 6.08 -26.61 -0.16 -2.31 16 14 C -0.11 -1.63 5.88 -26.69 -0.16 -1.78 16 15 C -0.13 -2.08 5.36 -26.61 -0.14 -2.22 16 16 C 0.15 3.20 3.17 -67.56 -0.21 2.98 16 17 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 18 C 0.10 2.19 5.60 37.16 0.21 2.39 16 19 O -0.54 -13.14 10.91 -60.44 -0.66 -13.80 16 20 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 21 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.09 1.87 5.40 -51.93 -0.28 1.59 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.07 1.76 6.31 -51.93 -0.33 1.43 16 30 H 0.00 0.05 8.13 -51.93 -0.42 -0.37 16 31 H 0.36 7.47 9.12 45.56 0.42 7.89 16 LS Contribution 248.07 15.07 3.74 3.74 Total: -1.00 -33.32 248.07 -6.40 -39.71 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.43 Total: 5.65 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.00 Total: 3.90 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.16 Total: -37.71 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.84 Total: -30.67 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.32 -6.40 -39.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044382451.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.850 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds