Wall clock time and date at job start Sun Mar 29 2020 22:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 120.00367 * 2 1 4 4 H 1.48504 * 109.46757 * 274.96653 * 3 2 1 5 5 H 1.48496 * 109.47222 * 34.96292 * 3 2 1 6 6 H 1.48493 * 109.47197 * 154.96683 * 3 2 1 7 7 C 1.40055 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99799 * 172.70352 * 7 2 1 9 9 C 1.46373 * 119.99874 * 352.70595 * 7 2 1 10 10 O 1.21687 * 120.00120 * 3.20908 * 9 7 2 11 11 N 1.34770 * 120.00129 * 183.20957 * 9 7 2 12 12 C 1.46931 * 120.62970 * 353.77389 * 11 9 7 13 13 C 1.53193 * 108.77612 * 233.62980 * 12 11 9 14 14 C 1.53040 * 109.31588 * 305.36582 * 13 12 11 15 15 C 1.53038 * 109.53522 * 61.36361 * 14 13 12 16 16 C 1.47001 * 120.61819 * 173.80054 * 11 9 7 17 17 H 1.08999 * 109.57757 * 246.14921 * 16 11 9 18 18 C 1.53001 * 109.62507 * 6.59286 * 16 11 9 19 19 O 1.42903 * 109.47170 * 290.83197 * 18 16 11 20 20 H 0.96996 * 119.99906 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.58598 * 113.84339 * 12 11 9 22 22 H 1.08994 * 109.58766 * 353.41760 * 12 11 9 23 23 H 1.09005 * 109.49722 * 185.41105 * 13 12 11 24 24 H 1.09002 * 109.49519 * 65.31822 * 13 12 11 25 25 H 1.09004 * 109.45987 * 301.34675 * 14 13 12 26 26 H 1.08990 * 109.45086 * 181.37915 * 14 13 12 27 27 H 1.08997 * 109.50180 * 58.58839 * 15 14 13 28 28 H 1.09007 * 109.49521 * 178.65170 * 15 14 13 29 29 H 1.08997 * 109.47196 * 50.83405 * 18 16 11 30 30 H 1.08999 * 109.46561 * 170.83237 * 18 16 11 31 31 H 0.96704 * 113.99332 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3833 2.1069 -1.3949 5 1 1.4947 2.6201 0.8023 6 1 3.5868 1.4120 0.5924 7 6 2.0069 -1.2129 0.0005 8 1 3.0804 -1.2167 -0.1182 9 6 1.2839 -2.4753 0.1620 10 8 0.0694 -2.4756 0.2372 11 7 1.9633 -3.6374 0.2275 12 6 3.4150 -3.6695 0.0027 13 6 3.7224 -4.7009 -1.0875 14 6 3.1175 -6.0502 -0.6930 15 6 1.5980 -5.9139 -0.5717 16 6 1.2657 -4.8968 0.5246 17 1 1.5971 -5.2789 1.4902 18 6 -0.2443 -4.6525 0.5572 19 8 -0.5741 -3.8602 1.6999 20 1 -0.4850 0.8400 -0.0004 21 1 3.9215 -3.9516 0.9258 22 1 3.7569 -2.6856 -0.3182 23 1 4.8020 -4.8041 -1.1966 24 1 3.2907 -4.3710 -2.0325 25 1 3.5312 -6.3677 0.2642 26 1 3.3558 -6.7916 -1.4555 27 1 1.1862 -5.5726 -1.5214 28 1 1.1654 -6.8807 -0.3141 29 1 -0.5470 -4.1274 -0.3487 30 1 -0.7657 -5.6080 0.6148 31 1 -1.5177 -3.6661 1.7847 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044382451.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:54 Heat of formation + Delta-G solvation = -98.934617 kcal Electronic energy + Delta-G solvation = -15230.120306 eV Core-core repulsion = 12703.965497 eV Total energy + Delta-G solvation = -2526.154809 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.63078 -37.46517 -36.97118 -34.55332 -33.20968 -32.51343 -28.45627 -27.11603 -24.92913 -23.17546 -21.77486 -20.49366 -18.35975 -17.83968 -17.54292 -16.54976 -16.08841 -15.46071 -15.22779 -14.85108 -14.72317 -14.32471 -13.87740 -13.51543 -13.23948 -12.89786 -12.75463 -12.64447 -12.37020 -12.02144 -11.86874 -11.68078 -11.37468 -11.19908 -10.91107 -10.47381 -9.18206 -8.80812 -8.15166 -6.71569 1.38754 1.40631 1.54916 2.26324 2.57940 2.90394 3.49181 3.79587 3.95737 4.08114 4.23554 4.39235 4.42745 4.57653 4.62243 4.66831 4.88759 5.01339 5.08764 5.13924 5.16867 5.25652 5.30859 5.45879 5.56601 5.86645 6.22871 6.55292 6.97318 7.13336 7.58624 8.61211 8.82116 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.011950 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.766693 B = 2342.624694 C = 2992.429090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.539 3.461 10 O -0.580 6.580 11 N -0.644 5.644 12 C 0.114 3.886 13 C -0.129 4.129 14 C -0.108 4.108 15 C -0.119 4.119 16 C 0.145 3.855 17 H 0.051 0.949 18 C 0.102 3.898 19 O -0.570 6.570 20 H 0.270 0.730 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 -8.979 -1.553 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.614 4.614 8 H 0.101 0.899 9 C 0.343 3.657 10 O -0.464 6.464 11 N -0.382 5.382 12 C -0.009 4.009 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.158 4.158 16 C 0.041 3.959 17 H 0.069 0.931 18 C 0.024 3.976 19 O -0.375 6.375 20 H 0.080 0.920 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.113 0.887 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.233 -8.933 -1.419 10.984 hybrid contribution -0.611 0.965 0.004 1.142 sum 5.621 -7.968 -1.415 9.853 Atomic orbital electron populations 1.70165 1.09153 1.28342 1.37201 1.26807 0.95453 1.04349 0.91514 0.85177 0.79011 0.76078 0.79079 1.18697 1.20016 1.17645 1.21516 0.95059 0.90729 1.54057 0.89949 1.18444 0.87051 0.83578 0.76593 1.90484 1.15056 1.85860 1.55024 1.48074 1.07981 1.06206 1.75939 1.21605 0.80991 1.00420 0.97911 1.21913 1.01756 0.95307 0.97716 1.21455 0.93531 0.96967 1.02574 1.21845 0.98238 0.98247 0.97421 1.21092 0.91360 0.85875 0.97538 0.93057 1.22010 0.94692 0.90862 0.90009 1.86497 1.29518 1.74985 1.46534 0.92022 0.92938 0.90740 0.88694 0.93371 0.91080 0.89447 0.93210 0.89000 0.94897 0.93929 0.78460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.39 11.86 21.84 0.26 -50.14 16 2 C 0.03 1.90 5.49 85.31 0.47 2.37 16 3 Si 0.99 42.23 29.57 68.60 2.03 44.26 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.58 -33.54 8.84 24.83 0.22 -33.32 16 8 H 0.08 4.38 5.73 -2.91 -0.02 4.36 16 9 C 0.54 31.74 7.34 86.36 0.63 32.37 16 10 O -0.58 -37.07 9.24 19.79 0.18 -36.89 16 11 N -0.64 -30.43 2.97 -799.90 -2.38 -32.81 16 12 C 0.11 4.32 6.31 86.36 0.54 4.86 16 13 C -0.13 -3.70 6.08 30.67 0.19 -3.52 16 14 C -0.11 -2.68 5.88 30.62 0.18 -2.50 16 15 C -0.12 -3.59 5.36 30.67 0.16 -3.43 16 16 C 0.15 5.89 3.17 44.96 0.14 6.03 16 17 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 18 C 0.10 4.46 5.60 71.98 0.40 4.86 16 19 O -0.57 -28.30 10.91 -124.88 -1.36 -29.66 16 20 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 21 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 22 H 0.07 3.03 5.40 -2.39 -0.01 3.02 16 23 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 25 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.03 1.69 6.31 -2.39 -0.02 1.67 16 30 H 0.04 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.37 15.98 9.12 -74.05 -0.68 15.31 16 Total: -1.00 -75.00 248.07 2.13 -72.87 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.46 Total: 24.63 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 2.94 Total: 7.73 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.12 Total: -82.94 kcal Atomic # 8 Polarization: -65.37 SS G_CDS: -1.18 Total: -66.55 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -75.00 2.13 -72.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044382451.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.061 kcal (2) G-P(sol) polarization free energy of solvation -75.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds