Wall clock time and date at job start Sun Mar 29 2020 21:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 N 1.46899 * 109.47029 * 65.31962 * 6 5 4 8 8 C 1.46902 * 110.99711 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.46709 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99922 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99726 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00391 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00016 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46877 * 59.99682 * 13 11 9 15 15 H 1.48498 * 109.47084 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47024 * 299.99852 * 13 11 9 17 17 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 18 18 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 19 19 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 20 20 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 21 21 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 22 22 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 23 23 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 24 24 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 25 25 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 26 26 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 27 27 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 28 28 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 29 29 H 1.00901 * 111.00341 * 56.04381 * 7 6 5 30 30 H 1.08996 * 109.47426 * 299.99378 * 8 7 6 31 31 H 1.08994 * 109.47321 * 60.00492 * 8 7 6 32 32 H 0.96995 * 120.00087 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.50326 * 182.41022 * 17 5 4 34 34 H 1.08996 * 109.53714 * 62.30612 * 17 5 4 35 35 H 1.09005 * 109.46673 * 294.18102 * 18 2 1 36 36 H 1.09003 * 109.46587 * 54.14643 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 7 6.2242 1.7863 0.9543 8 6 7.6835 1.7366 0.7928 9 6 8.2499 3.1279 0.9146 10 1 7.5918 3.9650 1.0945 11 6 9.6084 3.3318 0.7965 12 7 10.4100 2.3123 0.5780 13 14 10.3105 5.0564 0.9468 14 1 9.9794 5.6108 2.2840 15 1 11.7856 5.0061 0.7836 16 1 9.7246 5.9229 -0.1073 17 6 3.5182 -0.8715 1.0210 18 6 1.9952 -0.7707 1.1338 19 1 -0.3634 0.4471 0.9253 20 1 -0.3633 -1.0249 -0.0754 21 1 -0.3633 0.5778 -0.8499 22 1 1.5634 1.9257 -0.8330 23 1 1.7324 1.8608 0.9376 24 1 3.9099 2.3512 -0.1310 25 1 3.7820 0.8572 -1.0905 26 1 3.8886 1.0355 1.9561 27 1 6.0519 -0.2007 1.6142 28 1 5.8648 0.0298 -0.1408 29 1 5.9722 2.2187 1.8304 30 1 8.1132 1.1001 1.5662 31 1 7.9268 1.3305 -0.1889 32 1 11.3657 2.4558 0.4952 33 1 3.9098 -1.4302 1.8710 34 1 3.7814 -1.3842 0.0959 35 1 1.7324 -0.2708 2.0661 36 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044518330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:45 Heat of formation + Delta-G solvation = -14.729407 kcal Electronic energy + Delta-G solvation = -14207.668038 eV Core-core repulsion = 11918.716397 eV Total energy + Delta-G solvation = -2288.951641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.03332 -35.74826 -33.41141 -31.88009 -30.70390 -28.07263 -25.99003 -23.78601 -22.99135 -21.56937 -20.90214 -19.47926 -16.41032 -15.73654 -15.08242 -14.75307 -14.55071 -14.44112 -14.14009 -13.60662 -12.90148 -12.57695 -12.46191 -12.32280 -11.98922 -11.63347 -11.24503 -11.21493 -11.03942 -10.78075 -10.68673 -10.28412 -10.21851 -10.03756 -9.73196 -9.13107 -8.44738 -8.35308 -7.22412 -6.00313 -4.02300 3.35258 3.38949 3.42162 3.93387 4.45063 4.87863 4.93745 5.01024 5.14797 5.32121 5.35293 5.36444 5.53101 5.56247 5.66834 5.70340 5.72390 5.86291 5.91143 6.06154 6.18413 6.22812 6.35038 6.44646 6.64514 6.76514 7.06589 7.10676 7.30473 7.46760 7.81577 8.16958 8.44620 8.66312 9.07015 9.62481 11.10845 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.068552 B = 0.005194 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.353466 B = 5389.522060 C = 5663.104512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.101 4.101 5 C -0.084 4.084 6 C 0.065 3.935 7 N -0.688 5.688 8 C 0.194 3.806 9 C -0.514 4.514 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.112 4.112 18 C 0.058 3.942 19 H 0.021 0.979 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.029 0.971 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.326 0.674 30 H -0.015 1.015 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.892 -5.049 0.834 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.139 4.139 5 C -0.103 4.103 6 C -0.065 4.065 7 N -0.318 5.318 8 C 0.067 3.933 9 C -0.552 4.552 10 H 0.079 0.921 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.151 4.151 18 C -0.070 4.070 19 H 0.040 0.960 20 H 0.083 0.917 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.142 0.858 30 H 0.002 0.998 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.640 -5.163 -0.295 17.426 hybrid contribution 0.490 0.826 1.676 1.932 sum -16.150 -4.338 1.381 16.780 Atomic orbital electron populations 1.22341 0.87891 1.01860 1.00222 1.61947 1.07011 1.14510 1.43466 1.22195 0.96928 0.88261 0.99962 1.21521 0.91978 1.01816 0.98589 1.21199 0.95422 0.95041 0.98663 1.21906 0.92387 0.92056 1.00166 1.60659 1.14264 1.17505 1.39395 1.19541 0.80827 0.96837 0.96112 1.21164 0.91878 0.93394 1.48801 0.92052 1.24995 0.97063 0.97158 0.95382 1.69957 1.03955 1.30247 1.49687 0.86543 0.77664 0.84466 0.78608 1.20311 1.21355 1.20149 1.21630 0.93603 0.97499 1.02326 1.22072 0.96041 0.97677 0.91168 0.96024 0.91657 0.91525 0.91093 0.95274 0.89906 0.91480 0.92111 0.96629 0.91784 0.85820 0.99757 0.95475 0.92884 0.91796 0.91044 0.95229 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.59 60.07 0.58 0.82 16 2 N -0.54 -6.56 4.91 -242.95 -1.19 -7.75 16 3 C 0.05 0.68 5.46 -3.83 -0.02 0.66 16 4 C -0.10 -1.47 5.24 -26.65 -0.14 -1.61 16 5 C -0.08 -1.24 2.40 -90.50 -0.22 -1.45 16 6 C 0.06 1.18 5.08 -3.83 -0.02 1.16 16 7 N -0.69 -14.94 6.01 -115.06 -0.69 -15.64 16 8 C 0.19 5.19 5.44 -4.97 -0.03 5.16 16 9 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 10 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.11 -1.42 5.38 -26.65 -0.14 -1.56 16 18 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 19 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 22 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 23 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 1.32 7.84 -51.93 -0.41 0.92 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.33 6.79 8.72 -39.29 -0.34 6.44 16 30 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -30.04 288.58 -8.88 -38.92 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.63 Total: -0.45 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.43 Total: -9.79 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -1.15 Total: -49.93 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.04 -8.88 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.186 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds