Wall clock time and date at job start Sun Mar 29 2020 21:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 N 1.46899 * 109.47029 * 65.31962 * 6 5 4 8 8 C 1.46902 * 110.99711 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.46709 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99922 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99726 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00391 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00016 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46877 * 59.99682 * 13 11 9 15 15 H 1.48498 * 109.47084 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47024 * 299.99852 * 13 11 9 17 17 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 18 18 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 19 19 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 20 20 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 21 21 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 22 22 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 23 23 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 24 24 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 25 25 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 26 26 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 27 27 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 28 28 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 29 29 H 1.00901 * 111.00341 * 56.04381 * 7 6 5 30 30 H 1.08996 * 109.47426 * 299.99378 * 8 7 6 31 31 H 1.08994 * 109.47321 * 60.00492 * 8 7 6 32 32 H 0.96995 * 120.00087 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.50326 * 182.41022 * 17 5 4 34 34 H 1.08996 * 109.53714 * 62.30612 * 17 5 4 35 35 H 1.09005 * 109.46673 * 294.18102 * 18 2 1 36 36 H 1.09003 * 109.46587 * 54.14643 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 7 6.2242 1.7863 0.9543 8 6 7.6835 1.7366 0.7928 9 6 8.2499 3.1279 0.9146 10 1 7.5918 3.9650 1.0945 11 6 9.6084 3.3318 0.7965 12 7 10.4100 2.3123 0.5780 13 14 10.3105 5.0564 0.9468 14 1 9.9794 5.6108 2.2840 15 1 11.7856 5.0061 0.7836 16 1 9.7246 5.9229 -0.1073 17 6 3.5182 -0.8715 1.0210 18 6 1.9952 -0.7707 1.1338 19 1 -0.3634 0.4471 0.9253 20 1 -0.3633 -1.0249 -0.0754 21 1 -0.3633 0.5778 -0.8499 22 1 1.5634 1.9257 -0.8330 23 1 1.7324 1.8608 0.9376 24 1 3.9099 2.3512 -0.1310 25 1 3.7820 0.8572 -1.0905 26 1 3.8886 1.0355 1.9561 27 1 6.0519 -0.2007 1.6142 28 1 5.8648 0.0298 -0.1408 29 1 5.9722 2.2187 1.8304 30 1 8.1132 1.1001 1.5662 31 1 7.9268 1.3305 -0.1889 32 1 11.3657 2.4558 0.4952 33 1 3.9098 -1.4302 1.8710 34 1 3.7814 -1.3842 0.0959 35 1 1.7324 -0.2708 2.0661 36 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044518330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:45 Heat of formation + Delta-G solvation = -35.849933 kcal Electronic energy + Delta-G solvation = -14208.583892 eV Core-core repulsion = 11918.716397 eV Total energy + Delta-G solvation = -2289.867495 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.09751 -37.31241 -35.15197 -33.65638 -31.73269 -29.64671 -27.54966 -25.15068 -24.10440 -23.35853 -22.28173 -20.60598 -18.55197 -16.97340 -16.53405 -16.20628 -15.91925 -15.60801 -15.42907 -15.12159 -14.37474 -14.13293 -13.81497 -13.41801 -13.24921 -13.17665 -12.71464 -12.68173 -12.60869 -12.34632 -12.09093 -12.02758 -11.55777 -11.44523 -11.19337 -11.00599 -10.65154 -9.24206 -9.09350 -8.22413 -6.34169 1.41367 1.45369 1.53401 2.40392 3.05701 3.10709 3.53359 3.83291 3.91879 4.08382 4.29081 4.43463 4.46763 4.52045 4.63372 4.65740 4.72233 4.81298 4.91232 4.94845 5.00310 5.04174 5.06765 5.13874 5.24523 5.29232 5.43260 5.54957 5.61593 6.01965 6.17038 6.20485 6.45156 6.72739 6.89412 7.37017 8.89235 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.068552 B = 0.005194 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.353466 B = 5389.522060 C = 5663.104512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.559 5.559 3 C 0.061 3.939 4 C -0.098 4.098 5 C -0.075 4.075 6 C 0.067 3.933 7 N -0.684 5.684 8 C 0.207 3.793 9 C -0.536 4.536 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.268 1.268 17 C -0.108 4.108 18 C 0.061 3.939 19 H 0.027 0.973 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.015 0.985 28 H 0.052 0.948 29 H 0.333 0.667 30 H -0.041 1.041 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.305 -4.387 1.327 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.067 4.067 4 C -0.136 4.136 5 C -0.094 4.094 6 C -0.063 4.063 7 N -0.314 5.314 8 C 0.080 3.920 9 C -0.575 4.575 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.799 3.201 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.146 4.146 18 C -0.067 4.067 19 H 0.045 0.955 20 H 0.096 0.904 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.150 0.850 30 H -0.024 1.024 31 H 0.015 0.985 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.090 -4.510 0.204 18.644 hybrid contribution 0.905 0.553 1.503 1.840 sum -17.184 -3.957 1.707 17.716 Atomic orbital electron populations 1.22395 0.86138 1.02905 1.00803 1.61940 1.08667 1.13966 1.43881 1.22079 0.95048 0.89056 1.00509 1.21434 0.93910 1.00437 0.97814 1.21114 0.92533 0.96846 0.98897 1.21970 0.94856 0.90028 0.99432 1.60533 1.11147 1.19828 1.39866 1.19201 0.83707 0.95667 0.93471 1.21527 0.92600 0.94127 1.49209 0.91621 1.25990 0.97396 1.01859 0.94550 1.70094 1.04403 1.32830 1.50277 0.85350 0.76854 0.78688 0.79181 1.19009 1.20773 1.19271 1.21591 0.94830 0.95751 1.02472 1.22069 0.94746 0.98681 0.91187 0.95466 0.90441 0.90886 0.90224 0.94951 0.91701 0.92787 0.91669 0.96718 0.92964 0.84989 1.02373 0.98487 0.92594 0.90766 0.91738 0.94825 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.59 127.69 1.22 1.64 16 2 N -0.56 -12.20 4.91 -922.54 -4.53 -16.73 16 3 C 0.06 1.42 5.46 86.33 0.47 1.89 16 4 C -0.10 -2.81 5.24 30.65 0.16 -2.65 16 5 C -0.07 -2.15 2.40 -10.71 -0.03 -2.18 16 6 C 0.07 2.46 5.08 86.30 0.44 2.90 16 7 N -0.68 -30.23 6.01 -517.94 -3.11 -33.34 16 8 C 0.21 11.50 5.44 85.56 0.47 11.97 16 9 C -0.54 -31.24 9.32 25.60 0.24 -31.01 16 10 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 11 C 0.00 0.01 5.46 84.65 0.46 0.47 16 12 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 13 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C -0.11 -2.57 5.38 30.65 0.16 -2.41 16 18 C 0.06 1.24 5.46 86.33 0.47 1.72 16 19 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 20 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.07 1.09 8.09 -2.38 -0.02 1.07 16 22 H 0.08 1.71 8.09 -2.38 -0.02 1.69 16 23 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.33 13.93 8.72 -89.69 -0.78 13.15 16 30 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 31 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 Total: -1.00 -64.22 288.58 -1.03 -65.24 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.24 Total: 13.05 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.07 Total: -17.66 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -7.36 Total: -107.42 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.22 -1.03 -65.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.393 kcal (2) G-P(sol) polarization free energy of solvation -64.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds