Wall clock time and date at job start Sun Mar 29 2020 22:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48506 * 109.46872 * 240.00230 * 3 2 1 5 5 H 1.48494 * 109.46914 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47008 * 120.00353 * 3 2 1 7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.52439 * 54.99601 * 13 12 11 15 15 C 1.53171 * 109.52560 * 175.12600 * 13 12 11 16 16 C 1.53189 * 109.03553 * 176.82616 * 15 13 12 17 17 C 1.53091 * 109.21101 * 303.11216 * 16 15 13 18 18 O 1.42898 * 109.41586 * 57.57329 * 17 16 15 19 19 C 1.42900 * 114.10025 * 298.84282 * 18 17 16 20 20 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 22 22 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 23 23 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 24 24 H 1.09000 * 109.54166 * 296.75130 * 15 13 12 25 25 H 1.09002 * 109.54905 * 57.01594 * 15 13 12 26 26 H 1.08999 * 109.52507 * 183.17184 * 16 15 13 27 27 H 1.08997 * 109.47081 * 63.01747 * 16 15 13 28 28 H 1.09004 * 109.47909 * 297.59222 * 17 16 15 29 29 H 1.08997 * 109.48210 * 177.55733 * 17 16 15 30 30 H 1.08995 * 109.48233 * 301.17565 * 19 18 17 31 31 H 1.09004 * 109.49617 * 181.14451 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2756 2.7464 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.2108 -6.0793 -0.0016 14 1 2.8954 -5.9736 0.8399 15 6 1.4501 -7.4032 0.1204 16 6 2.4484 -8.5623 0.0390 17 6 3.2329 -8.4603 -1.2716 18 8 3.8914 -7.1936 -1.3337 19 6 3.0046 -6.0732 -1.3107 20 1 -0.4850 0.8401 0.0004 21 1 2.9190 -3.6477 -0.0009 22 1 0.5896 -4.9744 0.8887 23 1 0.5902 -4.9740 -0.8913 24 1 0.9281 -7.4369 1.0767 25 1 0.7293 -7.4861 -0.6930 26 1 1.9099 -9.5096 0.0684 27 1 3.1378 -8.5079 0.8814 28 1 2.5476 -8.5554 -2.1139 29 1 3.9746 -9.2579 -1.3144 30 1 2.3163 -6.1371 -2.1534 31 1 3.5815 -5.1511 -1.3817 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044984031.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:56 Heat of formation + Delta-G solvation = -131.430681 kcal Electronic energy + Delta-G solvation = -14233.950570 eV Core-core repulsion = 11706.386625 eV Total energy + Delta-G solvation = -2527.563944 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.55820 -39.20283 -36.14569 -34.65014 -33.99532 -32.00229 -28.77286 -26.59048 -25.97869 -23.19012 -21.64189 -21.10091 -19.22918 -17.51041 -17.23842 -16.93749 -16.31237 -15.93710 -15.90223 -15.24132 -14.87476 -14.50681 -14.12371 -13.59390 -13.50236 -13.11188 -12.87592 -12.68533 -12.58952 -12.13843 -12.07025 -12.00442 -11.62013 -11.24412 -10.92160 -10.42283 -9.89068 -9.50114 -8.29522 -6.86491 1.40708 1.44255 1.56080 2.25215 2.46606 2.92214 3.08677 3.59464 3.77098 3.81179 3.91601 4.03537 4.24205 4.38258 4.52060 4.61765 4.72510 4.76305 4.83887 4.96779 5.05850 5.09154 5.21110 5.31461 5.37748 5.86597 6.21295 6.23833 6.26213 6.86172 7.52955 8.47983 8.66645 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064412 B = 0.006184 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.596444 B = 4526.640818 C = 4829.572319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.536 3.464 10 O -0.634 6.634 11 N -0.755 5.755 12 C 0.143 3.857 13 C -0.118 4.118 14 H 0.083 0.917 15 C -0.116 4.116 16 C -0.147 4.147 17 C 0.050 3.950 18 O -0.399 6.399 19 C 0.071 3.929 20 H 0.275 0.725 21 H 0.395 0.605 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 -13.433 -1.096 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.612 4.612 8 H 0.106 0.894 9 C 0.340 3.660 10 O -0.522 6.522 11 N -0.410 5.410 12 C 0.019 3.981 13 C -0.137 4.137 14 H 0.101 0.899 15 C -0.154 4.154 16 C -0.184 4.184 17 C -0.027 4.027 18 O -0.318 6.318 19 C -0.006 4.006 20 H 0.085 0.915 21 H 0.229 0.771 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.880 -13.366 -1.109 15.073 hybrid contribution -0.011 0.769 0.080 0.774 sum 6.869 -12.596 -1.029 14.384 Atomic orbital electron populations 1.70183 1.09593 1.29048 1.36421 1.26996 0.95524 1.05022 0.91131 0.85052 0.78177 0.74614 0.80312 1.17776 1.19881 1.17828 1.21430 0.94790 0.90123 1.54823 0.89368 1.18636 0.86844 0.84451 0.76084 1.90547 1.16265 1.88043 1.57319 1.45843 1.09255 1.04755 1.81159 1.20913 0.94312 0.83598 0.99322 1.21897 0.97365 0.94653 0.99802 0.89884 1.21603 0.98016 0.92765 1.03030 1.22153 0.98454 0.99011 0.98813 1.22843 0.97582 0.85390 0.96845 1.87906 1.34343 1.14860 1.94668 1.22537 0.93004 0.89451 0.95600 0.91533 0.77141 0.94703 0.94791 0.90853 0.91469 0.88496 0.91072 0.92671 0.86982 0.93210 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.06 11.83 21.84 0.26 -50.80 16 2 C 0.03 1.60 5.50 85.31 0.47 2.07 16 3 Si 1.00 41.21 29.56 68.60 2.03 43.24 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.58 -33.03 9.54 24.83 0.24 -32.80 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.54 31.70 7.75 86.36 0.67 32.37 16 10 O -0.63 -43.41 15.02 -4.30 -0.06 -43.47 16 11 N -0.76 -34.48 5.30 -467.40 -2.48 -36.96 16 12 C 0.14 5.61 5.07 86.38 0.44 6.05 16 13 C -0.12 -3.36 2.42 -10.70 -0.03 -3.39 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.12 -2.64 5.32 30.71 0.16 -2.48 16 16 C -0.15 -2.59 6.13 30.69 0.19 -2.40 16 17 C 0.05 0.94 6.84 72.01 0.49 1.43 16 18 O -0.40 -10.44 10.76 -148.98 -1.60 -12.04 16 19 C 0.07 1.97 5.97 72.01 0.43 2.40 16 20 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 21 H 0.39 15.56 7.66 -92.71 -0.71 14.85 16 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 2.61 7.26 -2.39 -0.02 2.60 16 Total: -1.00 -75.53 260.82 1.61 -73.92 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.41 Total: 22.86 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 3.06 Total: 3.25 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.22 Total: -87.76 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -1.67 Total: -55.52 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -75.53 1.61 -73.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044984031.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.510 kcal (2) G-P(sol) polarization free energy of solvation -75.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds