Wall clock time and date at job start Sun Mar 29 2020 22:02:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30678 * 1
3 3 Si 1.86792 * 119.99859 * 2 1
4 4 H 1.48504 * 109.47022 * 269.99582 * 3 2 1
5 5 H 1.48497 * 109.47541 * 29.99756 * 3 2 1
6 6 H 1.48501 * 109.47365 * 150.00028 * 3 2 1
7 7 C 1.40052 * 119.99745 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99432 * 180.02562 * 7 2 1
9 9 C 1.46369 * 120.00114 * 0.02562 * 7 2 1
10 10 O 1.21684 * 120.00242 * 0.02562 * 9 7 2
11 11 N 1.34778 * 119.99965 * 179.97438 * 9 7 2
12 12 C 1.46496 * 120.00059 * 179.97438 * 11 9 7
13 13 C 1.52999 * 109.47401 * 180.02562 * 12 11 9
14 14 H 1.08999 * 109.52160 * 305.13140 * 13 12 11
15 15 C 1.53178 * 109.52605 * 185.00102 * 13 12 11
16 16 C 1.53178 * 109.03511 * 183.05016 * 15 13 12
17 17 C 1.53093 * 109.16255 * 56.98447 * 16 15 13
18 18 O 1.42904 * 109.42351 * 302.38111 * 17 16 15
19 19 C 1.42930 * 114.08305 * 61.15476 * 18 17 16
20 20 H 0.96998 * 119.99704 * 0.02562 * 1 2 3
21 21 H 0.96999 * 119.99574 * 0.02562 * 11 9 7
22 22 H 1.09000 * 109.47002 * 60.00134 * 12 11 9
23 23 H 1.09001 * 109.47759 * 300.00540 * 12 11 9
24 24 H 1.09002 * 109.54068 * 63.18427 * 15 13 12
25 25 H 1.08996 * 109.54450 * 302.92001 * 15 13 12
26 26 H 1.09000 * 109.52619 * 297.07706 * 16 15 13
27 27 H 1.08998 * 109.51869 * 176.88944 * 16 15 13
28 28 H 1.09002 * 109.48198 * 62.37219 * 17 16 15
29 29 H 1.08999 * 109.48029 * 182.39833 * 17 16 15
30 30 H 1.09003 * 109.47243 * 178.86599 * 19 18 17
31 31 H 1.08992 * 109.47948 * 58.83460 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3068 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 2.4883 2.0463 -1.4001
5 1 1.4382 2.6527 0.7000
6 1 3.5383 1.4402 0.7000
7 6 2.0070 -1.2129 0.0005
8 1 3.0869 -1.2129 0.0010
9 6 1.2751 -2.4805 0.0005
10 8 0.0583 -2.4805 -0.0004
11 7 1.9490 -3.6477 0.0005
12 6 1.2165 -4.9164 0.0011
13 6 2.2107 -6.0794 0.0016
14 1 2.8967 -5.9725 -0.8386
15 6 1.4501 -7.4031 -0.1236
16 6 2.4485 -8.5622 -0.0453
17 6 3.2309 -8.4637 1.2669
18 8 3.8895 -7.1971 1.3336
19 6 3.0023 -6.0767 1.3120
20 1 -0.4849 0.8400 -0.0004
21 1 2.9190 -3.6477 0.0009
22 1 0.5895 -4.9743 -0.8886
23 1 0.5901 -4.9740 0.8913
24 1 0.9288 -7.4349 -1.0804
25 1 0.7288 -7.4875 0.6891
26 1 3.1393 -8.5055 -0.8865
27 1 1.9101 -9.5094 -0.0781
28 1 2.5443 -8.5611 2.1078
29 1 3.9725 -9.2615 1.3087
30 1 3.5793 -5.1549 1.3863
31 1 2.3127 -6.1428 2.1534
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000044984033.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:02:58
Heat of formation + Delta-G solvation = -131.507914 kcal
Electronic energy + Delta-G solvation = -14233.422504 eV
Core-core repulsion = 11705.855211 eV
Total energy + Delta-G solvation = -2527.567293 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.55660 -39.20363 -36.14481 -34.65025 -33.99492 -32.00251 -28.77510 -26.59038
-25.97677 -23.19013 -21.64311 -21.10284 -19.23033 -17.51400 -17.23637 -16.93714
-16.31436 -15.93668 -15.89661 -15.24099 -14.87407 -14.51296 -14.12573 -13.59326
-13.50346 -13.10187 -12.88464 -12.71258 -12.58750 -12.13808 -12.04183 -11.99613
-11.61974 -11.24493 -10.93607 -10.42325 -9.88885 -9.50103 -8.29865 -6.86572
1.40759 1.42259 1.57807 2.25083 2.46407 2.92239 3.08666 3.59364
3.77067 3.81230 3.91593 4.03559 4.24248 4.38216 4.52114 4.61800
4.72540 4.76322 4.83886 4.96790 5.05774 5.09129 5.21110 5.31648
5.37787 5.86627 6.21350 6.23718 6.26267 6.86145 7.52873 8.47893
8.66574
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.064435 B = 0.006182 C = 0.005795
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 434.441547 B = 4528.253107 C = 4830.644145
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.823 5.823
2 C 0.028 3.972
3 Si 1.000 3.000
4 H -0.261 1.261
5 H -0.273 1.273
6 H -0.249 1.249
7 C -0.574 4.574
8 H 0.088 0.912
9 C 0.535 3.465
10 O -0.634 6.634
11 N -0.755 5.755
12 C 0.143 3.857
13 C -0.118 4.118
14 H 0.083 0.917
15 C -0.116 4.116
16 C -0.147 4.147
17 C 0.049 3.951
18 O -0.399 6.399
19 C 0.071 3.929
20 H 0.275 0.725
21 H 0.395 0.605
22 H 0.035 0.965
23 H 0.034 0.966
24 H 0.073 0.927
25 H 0.067 0.933
26 H 0.071 0.929
27 H 0.097 0.903
28 H 0.055 0.945
29 H 0.112 0.888
30 H 0.090 0.910
31 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.737 -13.445 1.087 15.550
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.453 5.453
2 C -0.187 4.187
3 Si 0.819 3.181
4 H -0.186 1.186
5 H -0.198 1.198
6 H -0.172 1.172
7 C -0.611 4.611
8 H 0.106 0.894
9 C 0.340 3.660
10 O -0.522 6.522
11 N -0.410 5.410
12 C 0.019 3.981
13 C -0.137 4.137
14 H 0.101 0.899
15 C -0.154 4.154
16 C -0.184 4.184
17 C -0.027 4.027
18 O -0.318 6.318
19 C -0.006 4.006
20 H 0.085 0.915
21 H 0.229 0.771
22 H 0.053 0.947
23 H 0.052 0.948
24 H 0.091 0.909
25 H 0.085 0.915
26 H 0.089 0.911
27 H 0.115 0.885
28 H 0.073 0.927
29 H 0.130 0.870
30 H 0.108 0.892
31 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 6.886 -13.380 1.105 15.088
hybrid contribution -0.022 0.774 -0.090 0.779
sum 6.864 -12.606 1.015 14.389
Atomic orbital electron populations
1.70194 1.09594 1.28981 1.36494 1.27002 0.95528 1.05036 0.91138
0.84993 0.78751 0.74939 0.79435 1.18594 1.19764 1.17179 1.21453
0.94787 0.90111 1.54729 0.89376 1.18642 0.86846 0.84458 0.76082
1.90546 1.16269 1.88045 1.57305 1.45844 1.09256 1.04755 1.81156
1.20910 0.94309 0.83596 0.99324 1.21897 0.97373 0.94652 0.99789
0.89884 1.21604 0.98018 0.92770 1.03029 1.22152 0.98457 0.99017
0.98801 1.22844 0.97593 0.85398 0.96837 1.87915 1.34344 1.14873
1.94650 1.22542 0.93012 0.89448 0.95597 0.91543 0.77142 0.94701
0.94791 0.90866 0.91454 0.91064 0.88496 0.92667 0.86993 0.89176
0.93193
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -51.06 11.83 21.84 0.26 -50.80 16
2 C 0.03 1.57 5.50 85.30 0.47 2.04 16
3 Si 1.00 41.24 29.56 68.60 2.03 43.27 16
4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16
5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16
6 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16
7 C -0.57 -32.98 9.54 24.83 0.24 -32.74 16
8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16
9 C 0.54 31.69 7.75 86.36 0.67 32.35 16
10 O -0.63 -43.40 15.02 -4.30 -0.06 -43.46 16
11 N -0.76 -34.47 5.31 -467.42 -2.48 -36.95 16
12 C 0.14 5.61 5.07 86.38 0.44 6.05 16
13 C -0.12 -3.36 2.42 -10.70 -0.03 -3.38 16
14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16
15 C -0.12 -2.64 5.31 30.71 0.16 -2.48 16
16 C -0.15 -2.59 6.14 30.68 0.19 -2.40 16
17 C 0.05 0.93 6.84 72.01 0.49 1.43 16
18 O -0.40 -10.44 10.77 -148.98 -1.60 -12.05 16
19 C 0.07 1.97 5.98 72.01 0.43 2.40 16
20 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16
21 H 0.39 15.57 7.67 -92.71 -0.71 14.85 16
22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16
23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16
24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
25 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16
26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16
28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16
30 H 0.09 2.61 7.27 -2.39 -0.02 2.59 16
31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
Total: -1.00 -75.56 260.84 1.61 -73.96
By element:
Atomic # 1 Polarization: 22.36 SS G_CDS: 0.41 Total: 22.77 kcal
Atomic # 6 Polarization: 0.21 SS G_CDS: 3.06 Total: 3.27 kcal
Atomic # 7 Polarization: -85.53 SS G_CDS: -2.22 Total: -87.75 kcal
Atomic # 8 Polarization: -53.84 SS G_CDS: -1.67 Total: -55.51 kcal
Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal
Total: -75.56 1.61 -73.96 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044984033.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.552 kcal
(2) G-P(sol) polarization free energy of solvation -75.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.508 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds