Wall clock time and date at job start Sun Mar 29 2020 21:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00248 * 2 1 4 4 H 1.08001 * 120.00087 * 202.34069 * 3 2 1 5 5 C 1.38814 * 119.99671 * 22.33632 * 3 2 1 6 6 N 1.31615 * 120.00393 * 11.35873 * 5 3 2 7 7 Si 1.86808 * 119.99596 * 191.35885 * 5 3 2 8 8 H 1.48498 * 109.47320 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46798 * 119.99983 * 7 5 3 10 10 H 1.48497 * 109.47040 * 239.99751 * 7 5 3 11 11 C 1.46502 * 120.00035 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47634 * 270.00555 * 11 2 1 13 13 C 1.53002 * 109.47387 * 179.97438 * 12 11 2 14 14 N 1.46893 * 109.47209 * 180.02562 * 13 12 11 15 15 C 1.48532 * 111.00382 * 52.60672 * 14 13 12 16 16 C 1.54937 * 103.22817 * 159.72150 * 15 14 13 17 17 C 1.54594 * 102.92116 * 322.58128 * 16 15 14 18 18 C 1.47909 * 110.99924 * 170.00291 * 14 13 12 19 19 H 1.08995 * 109.47360 * 274.21122 * 1 2 3 20 20 H 1.09002 * 109.46806 * 34.21554 * 1 2 3 21 21 H 1.09005 * 109.47304 * 154.21044 * 1 2 3 22 22 H 0.97002 * 119.99910 * 180.02562 * 6 5 3 23 23 H 1.09007 * 109.47002 * 30.00962 * 11 2 1 24 24 H 1.08997 * 109.47057 * 150.00114 * 11 2 1 25 25 H 1.08997 * 109.47288 * 300.00307 * 12 11 2 26 26 H 1.09001 * 109.47022 * 60.00115 * 12 11 2 27 27 H 1.09007 * 109.47231 * 300.00396 * 13 12 11 28 28 H 1.08997 * 109.47075 * 59.99699 * 13 12 11 29 29 H 1.09008 * 110.66264 * 278.15406 * 15 14 13 30 30 H 1.08995 * 110.66559 * 41.27824 * 15 14 13 31 31 H 1.09004 * 110.71814 * 204.22177 * 16 15 14 32 32 H 1.09003 * 110.72444 * 80.94386 * 16 15 14 33 33 H 1.08993 * 110.30824 * 263.04039 * 17 16 15 34 34 H 1.08998 * 110.30257 * 140.87389 * 17 16 15 35 35 H 1.08998 * 109.91229 * 333.50555 * 18 14 13 36 36 H 1.08996 * 109.92083 * 94.60428 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5337 2.3429 0.4569 6 7 0.3841 2.2692 1.0935 7 14 2.3366 4.0048 0.1682 8 1 3.6137 3.8168 -0.5659 9 1 1.4266 4.8613 -0.6340 10 1 2.6072 4.6574 1.4743 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7099 1.4432 13 6 3.2169 -3.0353 1.4437 14 7 3.4611 -3.4591 2.8288 15 6 2.1985 -3.4754 3.6110 16 6 2.5315 -4.4085 4.8022 17 6 3.4209 -5.4937 4.1532 18 6 3.9823 -4.8426 2.8756 19 1 -0.3634 0.0755 1.0248 20 1 -0.3633 0.8498 -0.5779 21 1 -0.3634 -0.9253 -0.4471 22 1 -0.0464 3.0778 1.4124 23 1 1.6084 -2.0286 -0.5131 24 1 3.1499 -1.1386 -0.5133 25 1 3.0414 -0.9501 1.9568 26 1 1.5000 -1.8401 1.9570 27 1 2.6275 -3.7949 0.9301 28 1 4.1693 -2.9056 0.9297 29 1 1.9518 -2.4740 3.9639 30 1 1.3829 -3.8867 3.0164 31 1 1.6229 -4.8490 5.2127 32 1 3.0820 -3.8687 5.5729 33 1 2.8244 -6.3702 3.9005 34 1 4.2332 -5.7690 4.8258 35 1 3.6464 -5.3957 1.9985 36 1 5.0716 -4.8280 2.9106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045060245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:55 Heat of formation + Delta-G solvation = 18.688910 kcal Electronic energy + Delta-G solvation = -14417.115399 eV Core-core repulsion = 12129.612886 eV Total energy + Delta-G solvation = -2287.502514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.81140 -35.82329 -33.26652 -31.15954 -29.19247 -28.58032 -25.82753 -24.77377 -22.30432 -20.89881 -20.48691 -19.68342 -16.67368 -15.90922 -15.71714 -14.65741 -14.55265 -13.90668 -13.43020 -13.26325 -12.97673 -12.30428 -12.26436 -12.01343 -11.36365 -11.11679 -11.08296 -10.91011 -10.87862 -10.68582 -10.56291 -10.44897 -10.32078 -9.95201 -9.77685 -9.62456 -8.48094 -8.19709 -6.67491 -5.65138 -3.10073 3.42463 3.49318 3.51733 4.20176 4.56809 4.71777 4.77213 4.98204 5.36064 5.43861 5.53088 5.57467 5.58490 5.73851 5.77494 5.86142 5.86904 6.05267 6.14341 6.16745 6.23293 6.26279 6.48237 6.54293 6.81309 6.98900 7.09913 7.21144 7.35826 7.45258 7.79933 7.88103 8.48179 9.32144 9.95838 10.44900 11.40481 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046557 B = 0.006148 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.271140 B = 4553.271856 C = 4584.827421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.604 5.604 3 C -0.249 4.249 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.911 5.911 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.154 3.846 12 C -0.136 4.136 13 C 0.050 3.950 14 N -0.518 5.518 15 C 0.036 3.964 16 C -0.125 4.125 17 C -0.130 4.130 18 C 0.033 3.967 19 H 0.026 0.974 20 H 0.044 0.956 21 H -0.006 1.006 22 H 0.250 0.750 23 H 0.032 0.968 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.787 -13.592 3.867 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.327 5.327 3 C -0.379 4.379 4 H 0.086 0.914 5 C -0.199 4.199 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.026 3.974 12 C -0.177 4.177 13 C -0.079 4.079 14 N -0.243 5.243 15 C -0.091 4.091 16 C -0.163 4.163 17 C -0.168 4.168 18 C -0.095 4.095 19 H 0.045 0.955 20 H 0.062 0.938 21 H 0.013 0.987 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.051 -13.073 4.104 14.288 hybrid contribution -0.224 0.385 -0.373 0.581 sum 3.827 -12.687 3.731 13.767 Atomic orbital electron populations 1.20774 0.82667 0.95377 0.99146 1.43984 1.01890 1.00786 1.86020 1.19277 0.97874 0.85429 1.35276 0.91356 1.25023 0.97760 0.98492 0.98623 1.70078 1.17973 1.26787 1.40841 0.86185 0.78632 0.84381 0.77388 1.20346 1.21721 1.21767 1.20770 0.95541 0.88002 0.93053 1.22339 0.99206 0.94643 1.01480 1.22374 0.99949 0.97559 0.87990 1.64818 1.25205 1.21258 1.12986 1.23213 0.91407 1.00447 0.94070 1.22503 0.99301 0.96536 0.98005 1.22387 0.99412 0.98078 0.96971 1.22874 1.00497 0.89250 0.96853 0.95525 0.93760 0.98728 0.93926 0.94919 0.93962 0.91187 0.92802 0.95481 0.91107 0.89606 0.93894 0.91361 0.90860 0.91862 0.91316 0.94138 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.23 9.01 59.85 0.54 4.77 16 2 N -0.60 -15.82 2.93 -181.12 -0.53 -16.35 16 3 C -0.25 -7.06 9.67 -15.06 -0.15 -7.21 16 4 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 5 C 0.00 -0.04 5.13 -17.43 -0.09 -0.13 16 6 N -0.91 -27.28 10.59 55.49 0.59 -26.69 16 7 Si 0.90 22.41 29.57 -169.99 -5.03 17.38 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 C 0.15 3.29 5.71 -4.04 -0.02 3.27 16 12 C -0.14 -2.68 5.20 -26.73 -0.14 -2.82 16 13 C 0.05 0.80 5.03 -3.83 -0.02 0.78 16 14 N -0.52 -7.90 5.40 -230.45 -1.24 -9.14 16 15 C 0.04 0.52 5.10 -1.90 -0.01 0.51 16 16 C -0.13 -1.44 7.06 -24.87 -0.18 -1.61 16 17 C -0.13 -1.36 6.93 -25.37 -0.18 -1.54 16 18 C 0.03 0.41 6.70 -2.75 -0.02 0.39 16 19 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 20 H 0.04 1.21 7.19 -51.93 -0.37 0.84 16 21 H -0.01 -0.13 7.85 -51.93 -0.41 -0.54 16 22 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 24 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 25 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 26 H 0.05 1.11 6.79 -51.93 -0.35 0.75 16 27 H 0.03 0.41 7.81 -51.93 -0.41 0.01 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.36 7.66 -51.92 -0.40 0.96 16 30 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.48 7.57 -51.93 -0.39 0.09 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 284.66 15.07 4.29 4.29 Total: -1.00 -30.33 284.66 -8.64 -38.97 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -6.46 Total: -4.88 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.26 Total: -3.58 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -1.19 Total: -52.18 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.33 -8.64 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.659 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds