Wall clock time and date at job start Sun Mar 29 2020 21:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00248 * 2 1 4 4 H 1.08001 * 120.00087 * 202.34069 * 3 2 1 5 5 C 1.38814 * 119.99671 * 22.33632 * 3 2 1 6 6 N 1.31615 * 120.00393 * 11.35873 * 5 3 2 7 7 Si 1.86808 * 119.99596 * 191.35885 * 5 3 2 8 8 H 1.48498 * 109.47320 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46798 * 119.99983 * 7 5 3 10 10 H 1.48497 * 109.47040 * 239.99751 * 7 5 3 11 11 C 1.46502 * 120.00035 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47634 * 270.00555 * 11 2 1 13 13 C 1.53002 * 109.47387 * 179.97438 * 12 11 2 14 14 N 1.46893 * 109.47209 * 180.02562 * 13 12 11 15 15 C 1.48532 * 111.00382 * 52.60672 * 14 13 12 16 16 C 1.54937 * 103.22817 * 159.72150 * 15 14 13 17 17 C 1.54594 * 102.92116 * 322.58128 * 16 15 14 18 18 C 1.47909 * 110.99924 * 170.00291 * 14 13 12 19 19 H 1.08995 * 109.47360 * 274.21122 * 1 2 3 20 20 H 1.09002 * 109.46806 * 34.21554 * 1 2 3 21 21 H 1.09005 * 109.47304 * 154.21044 * 1 2 3 22 22 H 0.97002 * 119.99910 * 180.02562 * 6 5 3 23 23 H 1.09007 * 109.47002 * 30.00962 * 11 2 1 24 24 H 1.08997 * 109.47057 * 150.00114 * 11 2 1 25 25 H 1.08997 * 109.47288 * 300.00307 * 12 11 2 26 26 H 1.09001 * 109.47022 * 60.00115 * 12 11 2 27 27 H 1.09007 * 109.47231 * 300.00396 * 13 12 11 28 28 H 1.08997 * 109.47075 * 59.99699 * 13 12 11 29 29 H 1.09008 * 110.66264 * 278.15406 * 15 14 13 30 30 H 1.08995 * 110.66559 * 41.27824 * 15 14 13 31 31 H 1.09004 * 110.71814 * 204.22177 * 16 15 14 32 32 H 1.09003 * 110.72444 * 80.94386 * 16 15 14 33 33 H 1.08993 * 110.30824 * 263.04039 * 17 16 15 34 34 H 1.08998 * 110.30257 * 140.87389 * 17 16 15 35 35 H 1.08998 * 109.91229 * 333.50555 * 18 14 13 36 36 H 1.08996 * 109.92083 * 94.60428 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5337 2.3429 0.4569 6 7 0.3841 2.2692 1.0935 7 14 2.3366 4.0048 0.1682 8 1 3.6137 3.8168 -0.5659 9 1 1.4266 4.8613 -0.6340 10 1 2.6072 4.6574 1.4743 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7099 1.4432 13 6 3.2169 -3.0353 1.4437 14 7 3.4611 -3.4591 2.8288 15 6 2.1985 -3.4754 3.6110 16 6 2.5315 -4.4085 4.8022 17 6 3.4209 -5.4937 4.1532 18 6 3.9823 -4.8426 2.8756 19 1 -0.3634 0.0755 1.0248 20 1 -0.3633 0.8498 -0.5779 21 1 -0.3634 -0.9253 -0.4471 22 1 -0.0464 3.0778 1.4124 23 1 1.6084 -2.0286 -0.5131 24 1 3.1499 -1.1386 -0.5133 25 1 3.0414 -0.9501 1.9568 26 1 1.5000 -1.8401 1.9570 27 1 2.6275 -3.7949 0.9301 28 1 4.1693 -2.9056 0.9297 29 1 1.9518 -2.4740 3.9639 30 1 1.3829 -3.8867 3.0164 31 1 1.6229 -4.8490 5.2127 32 1 3.0820 -3.8687 5.5729 33 1 2.8244 -6.3702 3.9005 34 1 4.2332 -5.7690 4.8258 35 1 3.6464 -5.3957 1.9985 36 1 5.0716 -4.8280 2.9106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045060245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:55 Heat of formation + Delta-G solvation = -0.673331 kcal Electronic energy + Delta-G solvation = -14417.955009 eV Core-core repulsion = 12129.612886 eV Total energy + Delta-G solvation = -2288.342123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92317 -37.71674 -34.80327 -32.98822 -30.64422 -29.69693 -27.94442 -26.40908 -23.82832 -22.36284 -21.63542 -21.08877 -18.77296 -17.11214 -16.95690 -16.49213 -16.03380 -15.39698 -15.01645 -14.95400 -14.47831 -13.80696 -13.67606 -13.36935 -12.90301 -12.80048 -12.58293 -12.54892 -12.28033 -12.13509 -12.08126 -12.02298 -11.89421 -11.68687 -11.44842 -11.31976 -10.65254 -9.33974 -8.79325 -7.82923 -5.30623 1.45977 1.46324 1.57532 2.51304 3.07111 3.32481 3.65518 3.78819 3.86152 4.08928 4.17409 4.35538 4.39844 4.57923 4.64112 4.66609 4.75701 4.80056 4.87727 4.91255 4.94516 4.98771 5.07110 5.18064 5.30770 5.33190 5.36279 5.49302 5.64760 5.71558 6.00134 6.14920 6.34292 7.15851 7.88165 8.31472 9.21514 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046557 B = 0.006148 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.271140 B = 4553.271856 C = 4584.827421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.622 5.622 3 C -0.260 4.260 4 H 0.071 0.929 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.970 3.030 8 H -0.266 1.266 9 H -0.289 1.289 10 H -0.293 1.293 11 C 0.151 3.849 12 C -0.118 4.118 13 C 0.061 3.939 14 N -0.539 5.539 15 C 0.032 3.968 16 C -0.121 4.121 17 C -0.124 4.124 18 C 0.030 3.970 19 H 0.000 1.000 20 H 0.018 0.982 21 H 0.029 0.971 22 H 0.247 0.753 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 -15.166 3.667 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.346 5.346 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.190 1.190 9 H -0.216 1.216 10 H -0.220 1.220 11 C 0.025 3.975 12 C -0.159 4.159 13 C -0.067 4.067 14 N -0.264 5.264 15 C -0.095 4.095 16 C -0.159 4.159 17 C -0.162 4.162 18 C -0.097 4.097 19 H 0.018 0.982 20 H 0.037 0.963 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.087 -14.684 3.898 16.021 hybrid contribution -0.528 0.813 -0.318 1.020 sum 4.559 -13.870 3.580 15.033 Atomic orbital electron populations 1.20526 0.82817 0.95928 0.97370 1.44255 1.02224 1.01921 1.86157 1.19601 0.98060 0.86652 1.34693 0.91168 1.25818 0.98512 1.01979 0.98832 1.70249 1.19370 1.27332 1.42030 0.85156 0.78124 0.79887 0.77030 1.18984 1.21612 1.21976 1.20951 0.95738 0.86685 0.94174 1.22031 0.98425 0.95827 0.99572 1.22176 0.99801 0.95614 0.89132 1.64770 1.25659 1.23662 1.12268 1.23190 0.91251 0.99784 0.95314 1.22495 1.00373 0.96278 0.96745 1.22392 0.99785 0.97892 0.96137 1.22974 1.00883 0.87601 0.98256 0.98178 0.96339 0.95235 0.94359 0.92490 0.93327 0.94754 0.94234 0.93974 0.90442 0.92302 0.94034 0.89641 0.91136 0.90252 0.89773 0.93340 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.24 9.01 127.77 1.15 10.39 16 2 N -0.62 -32.65 2.93 -726.94 -2.13 -34.78 16 3 C -0.26 -14.83 9.67 84.03 0.81 -14.02 16 4 H 0.07 3.90 7.84 -2.91 -0.02 3.87 16 5 C -0.06 -3.31 5.13 84.86 0.44 -2.87 16 6 N -0.94 -57.71 10.59 21.65 0.23 -57.48 16 7 Si 0.97 46.45 29.57 68.60 2.03 48.48 16 8 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 10 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 11 C 0.15 6.30 5.71 86.38 0.49 6.79 16 12 C -0.12 -4.65 5.20 30.59 0.16 -4.49 16 13 C 0.06 1.88 5.03 86.31 0.43 2.31 16 14 N -0.54 -15.74 5.40 -883.01 -4.76 -20.50 16 15 C 0.03 0.91 5.10 86.65 0.44 1.35 16 16 C -0.12 -2.54 7.06 31.80 0.22 -2.31 16 17 C -0.12 -2.21 6.93 31.47 0.22 -1.99 16 18 C 0.03 0.67 6.70 86.45 0.58 1.25 16 19 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 20 H 0.02 1.01 7.19 -2.39 -0.02 0.99 16 21 H 0.03 1.29 7.85 -2.38 -0.02 1.27 16 22 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 23 H 0.06 2.10 7.86 -2.38 -0.02 2.08 16 24 H 0.05 1.96 8.03 -2.39 -0.02 1.94 16 25 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 1.64 6.79 -2.39 -0.02 1.63 16 27 H 0.04 1.17 7.81 -2.38 -0.02 1.15 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 1.93 7.66 -2.38 -0.02 1.91 16 30 H 0.04 1.16 8.00 -2.39 -0.02 1.14 16 31 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 0.99 7.57 -2.39 -0.02 0.98 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.20 284.66 1.32 -63.87 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.01 Total: 3.99 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 4.95 Total: -3.59 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -6.66 Total: -112.76 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -65.20 1.32 -63.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.201 kcal (2) G-P(sol) polarization free energy of solvation -65.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds