Wall clock time and date at job start Sun Mar 29 2020 22:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48498 * 109.46870 * 90.00578 * 3 2 1 5 5 H 1.48501 * 109.47085 * 210.00356 * 3 2 1 6 6 H 1.48490 * 109.47554 * 330.00416 * 3 2 1 7 7 C 1.40055 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99881 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00342 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99951 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00240 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.46767 * 35.00202 * 12 11 9 14 14 C 1.52997 * 109.47351 * 275.00374 * 12 11 9 15 15 C 1.53000 * 109.47391 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.47015 * 59.99362 * 15 14 12 17 17 C 1.52998 * 109.47189 * 300.00527 * 16 15 14 18 18 C 1.52995 * 109.47059 * 154.99931 * 12 11 9 19 19 H 1.08997 * 109.47435 * 60.00165 * 18 12 11 20 20 O 1.42903 * 109.47440 * 300.00051 * 18 12 11 21 21 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 22 22 H 0.97005 * 119.99841 * 359.97438 * 11 9 7 23 23 H 1.09009 * 109.46732 * 299.99911 * 14 12 11 24 24 H 1.09001 * 109.47239 * 59.99360 * 14 12 11 25 25 H 1.09002 * 109.46796 * 299.99870 * 15 14 12 26 26 H 1.08996 * 109.47056 * 179.97438 * 15 14 12 27 27 H 1.08998 * 109.47048 * 180.02562 * 16 15 14 28 28 H 1.08997 * 109.46515 * 60.00387 * 16 15 14 29 29 H 1.09002 * 109.47236 * 299.99868 * 17 16 15 30 30 H 1.09001 * 109.46866 * 180.02562 * 17 16 15 31 31 H 0.96697 * 114.00205 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0462 1.4001 5 1 3.5383 1.4401 -0.7001 6 1 1.4383 2.6526 -0.6999 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9165 0.0000 13 1 0.3055 -4.8103 -0.5891 14 6 0.8530 -5.2950 1.4372 15 6 0.0874 -6.6197 1.4377 16 6 0.9639 -7.7155 0.8277 17 6 1.3273 -7.3369 -0.6095 18 6 2.0933 -6.0119 -0.6097 19 1 3.0042 -6.1181 -0.0206 20 8 2.4327 -5.6585 -1.9521 21 1 -0.4849 0.8401 0.0004 22 1 2.9190 -3.6477 -0.0009 23 1 1.7640 -5.4011 2.0264 24 1 0.2283 -4.5145 1.8716 25 1 -0.8235 -6.5131 0.8487 26 1 -0.1711 -6.8895 2.4617 27 1 0.4184 -8.6591 0.8277 28 1 1.8748 -7.8220 1.4168 29 1 0.4163 -7.2303 -1.1985 30 1 1.9513 -8.1178 -1.0441 31 1 2.9893 -6.3091 -2.4014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052010018.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:25 Heat of formation + Delta-G solvation = -111.760342 kcal Electronic energy + Delta-G solvation = -14617.507313 eV Core-core repulsion = 12090.796339 eV Total energy + Delta-G solvation = -2526.710974 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.04289 -36.63411 -35.22477 -32.90426 -32.06481 -29.62721 -28.36677 -25.84237 -22.45861 -21.81422 -19.72381 -19.40822 -17.14317 -16.90836 -15.45282 -15.27251 -14.35927 -14.13742 -13.69613 -13.63404 -13.00423 -12.68106 -12.49688 -12.18175 -11.73679 -11.19632 -11.13875 -10.96463 -10.83095 -10.57696 -10.39235 -10.35629 -10.15312 -9.76679 -9.65049 -8.78036 -7.50482 -7.36674 -6.10346 -4.55062 3.18796 3.25251 3.29218 4.16551 4.43348 4.67166 4.70499 4.91003 5.16184 5.24545 5.43494 5.46370 5.66593 5.72146 5.76732 5.86459 6.02564 6.10787 6.25510 6.27431 6.40968 6.46493 6.78557 6.86291 7.51116 7.93370 8.04921 8.23029 8.43205 9.10675 9.66155 10.69286 10.89200 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052999 B = 0.007736 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.182776 B = 3618.631332 C = 3890.593215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.558 3.442 10 O -0.582 6.582 11 N -0.755 5.755 12 C 0.166 3.834 13 H 0.079 0.921 14 C -0.126 4.126 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.148 4.148 18 C 0.099 3.901 19 H 0.051 0.949 20 O -0.554 6.554 21 H 0.267 0.733 22 H 0.379 0.621 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -12.533 0.925 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.190 1.190 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.362 3.638 10 O -0.465 6.465 11 N -0.408 5.408 12 C 0.059 3.941 13 H 0.097 0.903 14 C -0.165 4.165 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.187 4.187 18 C 0.039 3.961 19 H 0.069 0.931 20 O -0.358 6.358 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.442 -11.873 1.062 12.407 hybrid contribution 1.297 0.229 -0.110 1.321 sum 4.738 -11.644 0.952 12.607 Atomic orbital electron populations 1.70033 1.07013 1.27065 1.35746 1.25703 0.94600 1.00207 0.92680 0.86392 0.80185 0.81544 0.78720 1.19825 1.18960 1.20509 1.20892 0.93542 0.89509 1.54301 0.91568 1.18172 0.87184 0.82453 0.76017 1.90583 1.14088 1.86849 1.54996 1.46023 1.08328 1.04453 1.82037 1.20425 0.95624 0.83819 0.94235 0.90283 1.21953 1.00129 0.96824 0.97605 1.21556 0.98857 0.94857 1.00513 1.21491 0.99925 0.98391 0.95483 1.22256 1.01481 0.97127 0.97805 1.22159 0.96666 0.93867 0.83376 0.93096 1.86721 1.72847 1.49513 1.26682 0.92246 0.78999 0.92537 0.90553 0.91755 0.92106 0.92076 0.92084 0.91011 0.92064 0.78824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.74 11.83 55.55 0.66 -23.08 16 2 C 0.09 2.52 5.50 -17.36 -0.10 2.42 16 3 Si 0.91 20.75 29.56 -169.99 -5.02 15.72 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.55 -16.01 9.54 -35.63 -0.34 -16.35 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.56 16.50 7.71 -12.99 -0.10 16.40 16 10 O -0.58 -19.38 14.68 5.20 0.08 -19.30 16 11 N -0.76 -17.88 4.94 -55.22 -0.27 -18.16 16 12 C 0.17 3.35 2.14 -67.93 -0.15 3.20 16 13 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 14 C -0.13 -2.25 5.49 -26.73 -0.15 -2.39 16 15 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 16 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 17 C -0.15 -1.85 5.55 -26.71 -0.15 -2.00 16 18 C 0.10 1.53 2.99 -26.71 -0.08 1.45 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 20 O -0.55 -9.02 13.18 -35.23 -0.46 -9.49 16 21 H 0.27 7.46 8.29 -40.82 -0.34 7.12 16 22 H 0.38 8.12 8.58 -40.82 -0.35 7.77 16 23 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 24 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.37 3.92 9.08 45.56 0.41 4.33 16 LS Contribution 260.94 15.07 3.93 3.93 Total: -1.00 -35.73 260.94 -6.15 -41.88 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.68 Total: 9.09 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.37 Total: -0.60 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.38 Total: -41.24 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.39 Total: -28.79 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -35.73 -6.15 -41.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052010018.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.882 kcal (2) G-P(sol) polarization free energy of solvation -35.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds