Wall clock time and date at job start Sun Mar 29 2020 22:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48498 * 109.46870 * 90.00578 * 3 2 1 5 5 H 1.48501 * 109.47085 * 210.00356 * 3 2 1 6 6 H 1.48490 * 109.47554 * 330.00416 * 3 2 1 7 7 C 1.40055 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99881 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00342 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99951 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00240 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.46767 * 35.00202 * 12 11 9 14 14 C 1.52997 * 109.47351 * 275.00374 * 12 11 9 15 15 C 1.53000 * 109.47391 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.47015 * 59.99362 * 15 14 12 17 17 C 1.52998 * 109.47189 * 300.00527 * 16 15 14 18 18 C 1.52995 * 109.47059 * 154.99931 * 12 11 9 19 19 H 1.08997 * 109.47435 * 60.00165 * 18 12 11 20 20 O 1.42903 * 109.47440 * 300.00051 * 18 12 11 21 21 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 22 22 H 0.97005 * 119.99841 * 359.97438 * 11 9 7 23 23 H 1.09009 * 109.46732 * 299.99911 * 14 12 11 24 24 H 1.09001 * 109.47239 * 59.99360 * 14 12 11 25 25 H 1.09002 * 109.46796 * 299.99870 * 15 14 12 26 26 H 1.08996 * 109.47056 * 179.97438 * 15 14 12 27 27 H 1.08998 * 109.47048 * 180.02562 * 16 15 14 28 28 H 1.08997 * 109.46515 * 60.00387 * 16 15 14 29 29 H 1.09002 * 109.47236 * 299.99868 * 17 16 15 30 30 H 1.09001 * 109.46866 * 180.02562 * 17 16 15 31 31 H 0.96697 * 114.00205 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0462 1.4001 5 1 3.5383 1.4401 -0.7001 6 1 1.4383 2.6526 -0.6999 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9165 0.0000 13 1 0.3055 -4.8103 -0.5891 14 6 0.8530 -5.2950 1.4372 15 6 0.0874 -6.6197 1.4377 16 6 0.9639 -7.7155 0.8277 17 6 1.3273 -7.3369 -0.6095 18 6 2.0933 -6.0119 -0.6097 19 1 3.0042 -6.1181 -0.0206 20 8 2.4327 -5.6585 -1.9521 21 1 -0.4849 0.8401 0.0004 22 1 2.9190 -3.6477 -0.0009 23 1 1.7640 -5.4011 2.0264 24 1 0.2283 -4.5145 1.8716 25 1 -0.8235 -6.5131 0.8487 26 1 -0.1711 -6.8895 2.4617 27 1 0.4184 -8.6591 0.8277 28 1 1.8748 -7.8220 1.4168 29 1 0.4163 -7.2303 -1.1985 30 1 1.9513 -8.1178 -1.0441 31 1 2.9893 -6.3091 -2.4014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052010018.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:25 Heat of formation + Delta-G solvation = -141.473100 kcal Electronic energy + Delta-G solvation = -14618.795755 eV Core-core repulsion = 12090.796339 eV Total energy + Delta-G solvation = -2527.999416 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.51902 -38.63227 -36.48537 -34.88474 -34.19134 -30.92474 -29.97561 -27.91237 -23.81472 -23.19109 -21.45422 -21.00239 -19.15360 -18.19160 -17.45150 -16.98311 -16.01611 -15.56644 -15.25416 -14.89201 -14.48389 -14.45925 -14.14424 -13.70185 -13.35630 -13.04258 -12.77359 -12.63422 -12.46011 -12.15336 -12.03555 -11.72031 -11.59289 -11.14026 -10.93303 -10.82644 -9.82281 -9.41072 -8.28595 -6.85585 1.38382 1.41052 1.56195 2.24625 2.47946 3.07864 3.26242 3.61322 3.79700 4.00522 4.08489 4.25316 4.27695 4.41277 4.44250 4.56232 4.84861 4.96666 5.11305 5.15868 5.17596 5.25045 5.30980 5.35348 5.48667 5.89085 6.24929 6.33044 6.86337 7.00313 7.58055 8.51475 8.68917 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052999 B = 0.007736 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.182776 B = 3618.631332 C = 3890.593215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.250 1.250 6 H -0.272 1.272 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.539 3.461 10 O -0.634 6.634 11 N -0.745 5.745 12 C 0.157 3.843 13 H 0.029 0.971 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.108 4.108 17 C -0.142 4.142 18 C 0.107 3.893 19 H 0.077 0.923 20 O -0.583 6.583 21 H 0.274 0.726 22 H 0.392 0.608 23 H 0.076 0.924 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 -13.686 1.192 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.184 1.184 5 H -0.173 1.173 6 H -0.197 1.197 7 C -0.613 4.613 8 H 0.103 0.897 9 C 0.343 3.657 10 O -0.522 6.522 11 N -0.398 5.398 12 C 0.051 3.949 13 H 0.047 0.953 14 C -0.158 4.158 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.180 4.180 18 C 0.048 3.952 19 H 0.094 0.906 20 O -0.392 6.392 21 H 0.084 0.916 22 H 0.225 0.775 23 H 0.095 0.905 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.904 -13.099 1.323 14.429 hybrid contribution 0.533 0.530 -0.217 0.782 sum 6.436 -12.569 1.107 14.165 Atomic orbital electron populations 1.70210 1.09598 1.28866 1.36698 1.27031 0.95573 1.05078 0.91171 0.84982 0.78686 0.74848 0.79505 1.18368 1.17286 1.19701 1.21451 0.94658 0.90290 1.54917 0.89660 1.18594 0.86841 0.84446 0.75796 1.90533 1.16253 1.87995 1.57378 1.45740 1.08908 1.04573 1.80548 1.20677 0.94599 0.84012 0.95569 0.95300 1.21837 1.00596 0.97604 0.95802 1.21553 0.98294 0.93666 1.01932 1.21491 1.00428 0.98025 0.94616 1.22231 1.00981 0.96179 0.98649 1.22061 0.96953 0.93000 0.83216 0.90554 1.86652 1.73829 1.51436 1.27236 0.91627 0.77543 0.90517 0.95469 0.93452 0.90064 0.89347 0.90052 0.92770 0.88180 0.75821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.68 11.83 21.84 0.26 -52.42 16 2 C 0.03 1.52 5.50 85.31 0.47 1.99 16 3 Si 1.00 42.63 29.56 68.60 2.03 44.66 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.58 -34.55 9.54 24.83 0.24 -34.31 16 8 H 0.09 4.60 7.85 -2.92 -0.02 4.57 16 9 C 0.54 33.38 7.71 86.36 0.67 34.05 16 10 O -0.63 -45.00 14.68 -4.32 -0.06 -45.06 16 11 N -0.75 -36.36 4.94 -446.83 -2.21 -38.57 16 12 C 0.16 6.55 2.14 44.99 0.10 6.64 16 13 H 0.03 1.48 7.58 -2.39 -0.02 1.46 16 14 C -0.12 -4.35 5.49 30.59 0.17 -4.18 16 15 C -0.12 -3.16 5.92 30.60 0.18 -2.97 16 16 C -0.11 -2.11 5.92 30.60 0.18 -1.93 16 17 C -0.14 -3.12 5.55 30.61 0.17 -2.95 16 18 C 0.11 3.12 2.99 30.61 0.09 3.21 16 19 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 20 O -0.58 -18.23 13.18 -148.98 -1.96 -20.19 16 21 H 0.27 15.79 8.29 -92.71 -0.77 15.03 16 22 H 0.39 16.81 8.58 -92.70 -0.80 16.01 16 23 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.39 7.35 9.08 -74.06 -0.67 6.68 16 Total: -1.00 -83.38 260.94 -0.02 -83.40 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.33 Total: 28.65 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 2.26 Total: -0.46 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -1.95 Total: -90.99 kcal Atomic # 8 Polarization: -63.23 SS G_CDS: -2.03 Total: -65.26 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -83.38 -0.02 -83.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052010018.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.076 kcal (2) G-P(sol) polarization free energy of solvation -83.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds