Wall clock time and date at job start Sun Mar 29 2020 21:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00257 * 2 1 4 4 C 1.50700 * 109.46998 * 66.04796 * 3 2 1 5 5 H 1.07998 * 120.00145 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00229 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99724 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00250 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47273 * 90.00281 * 8 6 4 10 10 H 1.48508 * 109.47243 * 209.99930 * 8 6 4 11 11 H 1.48493 * 109.47098 * 329.99693 * 8 6 4 12 12 C 1.46901 * 110.99817 * 236.04766 * 2 1 3 13 13 H 1.09002 * 109.50437 * 178.95517 * 12 2 1 14 14 C 1.53119 * 109.50168 * 299.03244 * 12 2 1 15 15 C 1.53119 * 109.15731 * 177.63416 * 14 12 2 16 16 C 1.53039 * 109.28129 * 302.34211 * 15 14 12 17 17 N 1.46848 * 109.51997 * 59.18522 * 16 15 14 18 18 C 1.46897 * 111.00171 * 174.16537 * 17 16 15 19 19 C 1.46855 * 111.19639 * 298.25566 * 17 16 15 20 20 H 1.08991 * 109.47073 * 183.95727 * 1 2 3 21 21 H 1.09010 * 109.46760 * 303.95348 * 1 2 3 22 22 H 1.08997 * 109.46961 * 63.94615 * 1 2 3 23 23 H 1.08994 * 109.47213 * 186.04869 * 3 2 1 24 24 H 1.09000 * 109.47316 * 306.05127 * 3 2 1 25 25 H 0.97000 * 120.00366 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.52613 * 297.53987 * 14 12 2 27 27 H 1.09004 * 109.52408 * 57.66832 * 14 12 2 28 28 H 1.08998 * 109.50840 * 62.28812 * 15 14 12 29 29 H 1.09009 * 109.50099 * 182.36576 * 15 14 12 30 30 H 1.09001 * 109.46699 * 179.19867 * 16 15 14 31 31 H 1.09004 * 109.46628 * 299.18083 * 16 15 14 32 32 H 1.09000 * 109.47656 * 63.94551 * 18 17 16 33 33 H 1.08995 * 109.47203 * 183.95250 * 18 17 16 34 34 H 1.09004 * 109.46800 * 303.95007 * 18 17 16 35 35 H 1.09003 * 109.46449 * 301.72795 * 19 17 16 36 36 H 1.08992 * 109.46444 * 181.76011 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0748 1.5112 2.0488 6 6 2.0269 3.3494 1.5286 7 7 2.7121 4.0018 0.6150 8 14 1.5832 4.1867 3.1383 9 1 2.6607 3.9506 4.1326 10 1 1.4303 5.6463 2.9115 11 1 0.3059 3.6290 3.6507 12 6 1.9954 -0.7660 -1.1376 13 1 3.0849 -0.7346 -1.1246 14 6 1.5246 -2.2195 -1.0369 15 6 2.0281 -2.9964 -2.2564 16 6 1.5141 -2.3240 -3.5315 17 7 1.9921 -0.9364 -3.5813 18 6 1.6341 -0.3018 -4.8568 19 6 1.4824 -0.1581 -2.4451 20 1 -0.3633 -1.0251 0.0709 21 1 -0.3633 0.5740 0.8525 22 1 -0.3633 0.4514 -0.9232 23 1 3.0797 1.3444 -0.1083 24 1 1.5612 1.9274 -0.8308 25 1 2.9867 4.9179 0.7770 26 1 1.9239 -2.6696 -0.1280 27 1 0.4353 -2.2485 -1.0096 28 1 3.1181 -3.0002 -2.2611 29 1 1.6609 -4.0218 -2.2117 30 1 1.8826 -2.8665 -4.4021 31 1 0.4241 -2.3328 -3.5327 32 1 0.5490 -0.2391 -4.9397 33 1 2.0600 0.7008 -4.8960 34 1 2.0276 -0.8962 -5.6815 35 1 0.3925 -0.1772 -2.4514 36 1 1.8278 0.8724 -2.5266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053245233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:10 Heat of formation + Delta-G solvation = 4.769733 kcal Electronic energy + Delta-G solvation = -14907.928093 eV Core-core repulsion = 12619.821999 eV Total energy + Delta-G solvation = -2288.106094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.20017 -35.94371 -33.03394 -32.23319 -29.24469 -27.18559 -26.44599 -25.05291 -22.95293 -22.07558 -20.41288 -18.77225 -16.43847 -15.55647 -15.13360 -14.84348 -14.47824 -14.21176 -13.73667 -13.41946 -12.87193 -12.65972 -12.30538 -12.18892 -11.88411 -11.48265 -11.33045 -11.02092 -10.84223 -10.79498 -10.53758 -10.29682 -10.16408 -10.10736 -9.61931 -9.16036 -8.40782 -8.14333 -7.14740 -5.99735 -4.00918 3.33936 3.39650 3.43188 4.11402 4.45147 4.90237 5.12485 5.17405 5.32587 5.35771 5.38407 5.54736 5.56223 5.71872 5.79797 5.91148 5.95598 5.99821 6.09787 6.18341 6.24779 6.28641 6.38161 6.61619 6.73734 6.79592 7.21967 7.26741 7.38013 7.40190 7.84064 8.13682 8.24646 8.60220 9.06799 9.63007 11.11033 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048332 B = 0.007473 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.189198 B = 3745.777281 C = 4076.314216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.532 5.532 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.089 3.911 13 H 0.083 0.917 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.056 3.944 17 N -0.540 5.540 18 C 0.026 3.974 19 C 0.025 3.975 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.030 0.970 24 H -0.008 1.008 25 H 0.261 0.739 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -10.772 -7.743 13.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.021 4.021 13 H 0.101 0.899 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.072 4.072 17 N -0.265 5.265 18 C -0.122 4.122 19 C -0.105 4.105 20 H 0.065 0.935 21 H 0.092 0.908 22 H 0.030 0.970 23 H 0.048 0.952 24 H 0.010 0.990 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.425 -10.817 -7.290 13.268 hybrid contribution -1.369 1.104 -0.072 1.760 sum -3.794 -9.713 -7.363 12.765 Atomic orbital electron populations 1.22293 0.89491 0.99524 1.00431 1.62408 1.06748 1.18034 1.38292 1.19733 0.95444 0.81643 0.96470 1.21188 1.34764 0.96893 1.01767 0.91911 1.24990 0.95358 0.97364 0.96941 1.69962 1.38417 1.11435 1.33991 0.86506 0.78833 0.78399 0.83708 1.20620 1.21368 1.19919 1.21705 1.00141 0.92687 0.87547 0.89921 1.21671 1.00401 0.95386 0.97692 1.21571 1.01694 0.98000 0.94074 1.22086 0.97008 0.89556 0.98549 1.61923 1.60026 1.02094 1.02462 1.22335 0.98208 1.00140 0.91537 1.22910 0.97389 0.98541 0.91615 0.93503 0.90842 0.96963 0.95192 0.98993 0.92975 0.91198 0.92434 0.91116 0.91835 0.91303 0.95469 0.96153 0.91309 0.91779 0.94992 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 8.64 60.07 0.52 1.14 16 2 N -0.53 -11.70 4.74 -236.23 -1.12 -12.83 16 3 C 0.19 5.07 4.16 -4.98 -0.02 5.05 16 4 C -0.51 -14.44 8.46 -34.44 -0.29 -14.73 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.09 1.67 2.39 -67.63 -0.16 1.50 16 13 H 0.08 1.66 8.03 -51.93 -0.42 1.24 16 14 C -0.11 -1.74 5.14 -26.61 -0.14 -1.87 16 15 C -0.12 -1.47 6.09 -26.65 -0.16 -1.64 16 16 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 17 N -0.54 -8.32 4.91 -242.95 -1.19 -9.51 16 18 C 0.03 0.35 9.59 60.06 0.58 0.92 16 19 C 0.02 0.44 4.06 -3.83 -0.02 0.43 16 20 H 0.05 0.80 6.28 -51.93 -0.33 0.48 16 21 H 0.07 1.57 6.76 -51.92 -0.35 1.22 16 22 H 0.01 0.24 6.27 -51.93 -0.33 -0.09 16 23 H 0.03 0.85 8.00 -51.93 -0.42 0.44 16 24 H -0.01 -0.21 6.96 -51.93 -0.36 -0.58 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.87 6.31 -51.93 -0.33 0.54 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.03 0.58 6.34 -51.93 -0.33 0.25 16 36 H 0.08 1.62 6.78 -51.93 -0.35 1.27 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -29.72 275.46 -8.35 -38.07 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -6.09 Total: -3.48 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 0.19 Total: -7.02 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -1.58 Total: -48.55 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.72 -8.35 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053245233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.842 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds