Wall clock time and date at job start Sun Mar 29 2020 21:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00257 * 2 1 4 4 C 1.50700 * 109.46998 * 66.04796 * 3 2 1 5 5 H 1.07998 * 120.00145 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00229 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99724 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00250 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47273 * 90.00281 * 8 6 4 10 10 H 1.48508 * 109.47243 * 209.99930 * 8 6 4 11 11 H 1.48493 * 109.47098 * 329.99693 * 8 6 4 12 12 C 1.46901 * 110.99817 * 236.04766 * 2 1 3 13 13 H 1.09002 * 109.50437 * 178.95517 * 12 2 1 14 14 C 1.53119 * 109.50168 * 299.03244 * 12 2 1 15 15 C 1.53119 * 109.15731 * 177.63416 * 14 12 2 16 16 C 1.53039 * 109.28129 * 302.34211 * 15 14 12 17 17 N 1.46848 * 109.51997 * 59.18522 * 16 15 14 18 18 C 1.46897 * 111.00171 * 174.16537 * 17 16 15 19 19 C 1.46855 * 111.19639 * 298.25566 * 17 16 15 20 20 H 1.08991 * 109.47073 * 183.95727 * 1 2 3 21 21 H 1.09010 * 109.46760 * 303.95348 * 1 2 3 22 22 H 1.08997 * 109.46961 * 63.94615 * 1 2 3 23 23 H 1.08994 * 109.47213 * 186.04869 * 3 2 1 24 24 H 1.09000 * 109.47316 * 306.05127 * 3 2 1 25 25 H 0.97000 * 120.00366 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.52613 * 297.53987 * 14 12 2 27 27 H 1.09004 * 109.52408 * 57.66832 * 14 12 2 28 28 H 1.08998 * 109.50840 * 62.28812 * 15 14 12 29 29 H 1.09009 * 109.50099 * 182.36576 * 15 14 12 30 30 H 1.09001 * 109.46699 * 179.19867 * 16 15 14 31 31 H 1.09004 * 109.46628 * 299.18083 * 16 15 14 32 32 H 1.09000 * 109.47656 * 63.94551 * 18 17 16 33 33 H 1.08995 * 109.47203 * 183.95250 * 18 17 16 34 34 H 1.09004 * 109.46800 * 303.95007 * 18 17 16 35 35 H 1.09003 * 109.46449 * 301.72795 * 19 17 16 36 36 H 1.08992 * 109.46444 * 181.76011 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0748 1.5112 2.0488 6 6 2.0269 3.3494 1.5286 7 7 2.7121 4.0018 0.6150 8 14 1.5832 4.1867 3.1383 9 1 2.6607 3.9506 4.1326 10 1 1.4303 5.6463 2.9115 11 1 0.3059 3.6290 3.6507 12 6 1.9954 -0.7660 -1.1376 13 1 3.0849 -0.7346 -1.1246 14 6 1.5246 -2.2195 -1.0369 15 6 2.0281 -2.9964 -2.2564 16 6 1.5141 -2.3240 -3.5315 17 7 1.9921 -0.9364 -3.5813 18 6 1.6341 -0.3018 -4.8568 19 6 1.4824 -0.1581 -2.4451 20 1 -0.3633 -1.0251 0.0709 21 1 -0.3633 0.5740 0.8525 22 1 -0.3633 0.4514 -0.9232 23 1 3.0797 1.3444 -0.1083 24 1 1.5612 1.9274 -0.8308 25 1 2.9867 4.9179 0.7770 26 1 1.9239 -2.6696 -0.1280 27 1 0.4353 -2.2485 -1.0096 28 1 3.1181 -3.0002 -2.2611 29 1 1.6609 -4.0218 -2.2117 30 1 1.8826 -2.8665 -4.4021 31 1 0.4241 -2.3328 -3.5327 32 1 0.5490 -0.2391 -4.9397 33 1 2.0600 0.7008 -4.8960 34 1 2.0276 -0.8962 -5.6815 35 1 0.3925 -0.1772 -2.4514 36 1 1.8278 0.8724 -2.5266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053245233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:10 Heat of formation + Delta-G solvation = -16.744494 kcal Electronic energy + Delta-G solvation = -14908.861020 eV Core-core repulsion = 12619.821999 eV Total energy + Delta-G solvation = -2289.039021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59041 -37.50885 -34.85739 -33.77178 -30.78068 -29.07124 -27.64930 -26.84954 -24.48454 -23.50231 -21.93417 -20.19991 -18.56126 -16.96342 -16.78008 -16.43375 -15.92533 -15.63626 -15.18899 -14.95174 -14.48246 -14.15410 -13.86713 -13.57099 -13.31090 -13.07474 -12.72783 -12.66220 -12.62757 -12.37321 -12.20085 -12.05921 -11.60694 -11.42746 -11.38679 -11.06900 -10.61398 -9.37681 -8.93180 -8.20440 -6.31222 1.40529 1.42648 1.53512 2.39960 2.91439 3.11911 3.38277 3.83410 3.93383 4.10538 4.17603 4.29892 4.44990 4.48035 4.58763 4.60482 4.64202 4.74121 4.81796 4.93183 4.94211 4.99602 5.05963 5.14282 5.18157 5.28627 5.40852 5.45526 5.64331 5.96878 6.07278 6.15697 6.34431 6.66100 6.85446 7.38547 8.90562 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048332 B = 0.007473 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.189198 B = 3745.777281 C = 4076.314216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.541 5.541 3 C 0.212 3.788 4 C -0.526 4.526 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.263 1.263 12 C 0.086 3.914 13 H 0.060 0.940 14 C -0.106 4.106 15 C -0.109 4.109 16 C 0.054 3.946 17 N -0.554 5.554 18 C 0.026 3.974 19 C 0.039 3.961 20 H 0.081 0.919 21 H 0.056 0.944 22 H 0.010 0.990 23 H -0.004 1.004 24 H -0.035 1.035 25 H 0.264 0.736 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.033 0.967 32 H 0.025 0.975 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.031 0.969 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -12.465 -7.666 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.264 5.264 3 C 0.085 3.915 4 C -0.565 4.565 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.187 1.187 12 C -0.023 4.023 13 H 0.078 0.922 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.073 4.073 17 N -0.279 5.279 18 C -0.122 4.122 19 C -0.090 4.090 20 H 0.100 0.900 21 H 0.075 0.925 22 H 0.029 0.971 23 H 0.014 0.986 24 H -0.017 1.017 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.049 0.951 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.446 -12.540 -7.227 14.878 hybrid contribution -1.025 1.589 -0.168 1.898 sum -4.471 -10.951 -7.395 13.950 Atomic orbital electron populations 1.22273 0.87926 1.01351 0.99574 1.62321 1.08161 1.15386 1.40487 1.19314 0.93220 0.83987 0.94953 1.21513 1.34975 0.97559 1.02423 0.91794 1.25953 0.94985 0.98059 1.00801 1.70100 1.39331 1.11887 1.36214 0.85351 0.79001 0.77204 0.78864 1.19827 1.20742 1.18728 1.21764 0.98858 0.94739 0.86924 0.92192 1.21625 1.00778 0.92635 0.99308 1.21578 1.01473 0.99194 0.92499 1.22228 0.97440 0.87927 0.99754 1.61912 1.60461 1.03293 1.02262 1.22388 0.98620 0.99982 0.91224 1.22579 0.96939 0.96908 0.92617 0.90039 0.92533 0.97107 0.98605 1.01746 0.92710 0.91105 0.91659 0.91561 0.88522 0.88696 0.94913 0.95629 0.92580 0.89062 0.95102 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 8.64 127.69 1.10 2.56 16 2 N -0.54 -24.31 4.74 -901.30 -4.27 -28.59 16 3 C 0.21 11.73 4.16 85.56 0.36 12.09 16 4 C -0.53 -30.70 8.46 25.60 0.22 -30.48 16 5 H 0.06 3.64 7.12 -2.91 -0.02 3.62 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 7 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 8 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 C 0.09 3.28 2.39 44.97 0.11 3.38 16 13 H 0.06 2.52 8.03 -2.39 -0.02 2.50 16 14 C -0.11 -3.02 5.14 30.67 0.16 -2.86 16 15 C -0.11 -2.46 6.09 30.65 0.19 -2.27 16 16 C 0.05 1.24 5.46 86.33 0.47 1.71 16 17 N -0.55 -16.50 4.91 -922.57 -4.53 -21.03 16 18 C 0.03 0.65 9.59 127.69 1.22 1.87 16 19 C 0.04 1.44 4.06 86.32 0.35 1.79 16 20 H 0.08 2.64 6.28 -2.39 -0.02 2.62 16 21 H 0.06 2.41 6.76 -2.38 -0.02 2.39 16 22 H 0.01 0.42 6.27 -2.39 -0.01 0.40 16 23 H 0.00 -0.25 8.00 -2.39 -0.02 -0.27 16 24 H -0.04 -2.10 6.96 -2.39 -0.02 -2.11 16 25 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.77 6.31 -2.38 -0.02 1.76 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 31 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.79 8.10 -2.38 -0.02 1.77 16 35 H 0.03 1.12 6.34 -2.39 -0.02 1.10 16 36 H 0.04 1.79 6.78 -2.39 -0.02 1.77 16 Total: -1.00 -65.62 275.46 -0.83 -66.46 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.03 Total: 5.18 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.64 Total: -11.76 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -8.52 Total: -106.96 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.62 -0.83 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053245233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.711 kcal (2) G-P(sol) polarization free energy of solvation -65.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds