Wall clock time and date at job start Sun Mar 29 2020 21:37:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46901 * 111.00257 * 2 1
4 4 C 1.50700 * 109.46998 * 66.04796 * 3 2 1
5 5 H 1.07998 * 120.00145 * 0.02562 * 4 3 2
6 6 C 1.37876 * 120.00229 * 180.02562 * 4 3 2
7 7 N 1.31515 * 119.99724 * 359.97438 * 6 4 3
8 8 Si 1.86796 * 120.00250 * 180.02562 * 6 4 3
9 9 H 1.48501 * 109.47273 * 90.00281 * 8 6 4
10 10 H 1.48508 * 109.47243 * 209.99930 * 8 6 4
11 11 H 1.48493 * 109.47098 * 329.99693 * 8 6 4
12 12 C 1.46901 * 110.99817 * 236.04766 * 2 1 3
13 13 H 1.09002 * 109.50437 * 178.95517 * 12 2 1
14 14 C 1.53119 * 109.50168 * 299.03244 * 12 2 1
15 15 C 1.53119 * 109.15731 * 177.63416 * 14 12 2
16 16 C 1.53039 * 109.28129 * 302.34211 * 15 14 12
17 17 N 1.46848 * 109.51997 * 59.18522 * 16 15 14
18 18 C 1.46897 * 111.00171 * 174.16537 * 17 16 15
19 19 C 1.46855 * 111.19639 * 298.25566 * 17 16 15
20 20 H 1.08991 * 109.47073 * 183.95727 * 1 2 3
21 21 H 1.09010 * 109.46760 * 303.95348 * 1 2 3
22 22 H 1.08997 * 109.46961 * 63.94615 * 1 2 3
23 23 H 1.08994 * 109.47213 * 186.04869 * 3 2 1
24 24 H 1.09000 * 109.47316 * 306.05127 * 3 2 1
25 25 H 0.97000 * 120.00366 * 180.02562 * 7 6 4
26 26 H 1.08999 * 109.52613 * 297.53987 * 14 12 2
27 27 H 1.09004 * 109.52408 * 57.66832 * 14 12 2
28 28 H 1.08998 * 109.50840 * 62.28812 * 15 14 12
29 29 H 1.09009 * 109.50099 * 182.36576 * 15 14 12
30 30 H 1.09001 * 109.46699 * 179.19867 * 16 15 14
31 31 H 1.09004 * 109.46628 * 299.18083 * 16 15 14
32 32 H 1.09000 * 109.47656 * 63.94551 * 18 17 16
33 33 H 1.08995 * 109.47203 * 183.95250 * 18 17 16
34 34 H 1.09004 * 109.46800 * 303.95007 * 18 17 16
35 35 H 1.09003 * 109.46449 * 301.72795 * 19 17 16
36 36 H 1.08992 * 109.46444 * 181.76011 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6371 2.0471 1.2985
5 1 1.0748 1.5112 2.0488
6 6 2.0269 3.3494 1.5286
7 7 2.7121 4.0018 0.6150
8 14 1.5832 4.1867 3.1383
9 1 2.6607 3.9506 4.1326
10 1 1.4303 5.6463 2.9115
11 1 0.3059 3.6290 3.6507
12 6 1.9954 -0.7660 -1.1376
13 1 3.0849 -0.7346 -1.1246
14 6 1.5246 -2.2195 -1.0369
15 6 2.0281 -2.9964 -2.2564
16 6 1.5141 -2.3240 -3.5315
17 7 1.9921 -0.9364 -3.5813
18 6 1.6341 -0.3018 -4.8568
19 6 1.4824 -0.1581 -2.4451
20 1 -0.3633 -1.0251 0.0709
21 1 -0.3633 0.5740 0.8525
22 1 -0.3633 0.4514 -0.9232
23 1 3.0797 1.3444 -0.1083
24 1 1.5612 1.9274 -0.8308
25 1 2.9867 4.9179 0.7770
26 1 1.9239 -2.6696 -0.1280
27 1 0.4353 -2.2485 -1.0096
28 1 3.1181 -3.0002 -2.2611
29 1 1.6609 -4.0218 -2.2117
30 1 1.8826 -2.8665 -4.4021
31 1 0.4241 -2.3328 -3.5327
32 1 0.5490 -0.2391 -4.9397
33 1 2.0600 0.7008 -4.8960
34 1 2.0276 -0.8962 -5.6815
35 1 0.3925 -0.1772 -2.4514
36 1 1.8278 0.8724 -2.5266
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000053245233.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:37:10
Heat of formation + Delta-G solvation = -16.744494 kcal
Electronic energy + Delta-G solvation = -14908.861020 eV
Core-core repulsion = 12619.821999 eV
Total energy + Delta-G solvation = -2289.039021 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 212.158 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.59041 -37.50885 -34.85739 -33.77178 -30.78068 -29.07124 -27.64930 -26.84954
-24.48454 -23.50231 -21.93417 -20.19991 -18.56126 -16.96342 -16.78008 -16.43375
-15.92533 -15.63626 -15.18899 -14.95174 -14.48246 -14.15410 -13.86713 -13.57099
-13.31090 -13.07474 -12.72783 -12.66220 -12.62757 -12.37321 -12.20085 -12.05921
-11.60694 -11.42746 -11.38679 -11.06900 -10.61398 -9.37681 -8.93180 -8.20440
-6.31222 1.40529 1.42648 1.53512 2.39960 2.91439 3.11911 3.38277
3.83410 3.93383 4.10538 4.17603 4.29892 4.44990 4.48035 4.58763
4.60482 4.64202 4.74121 4.81796 4.93183 4.94211 4.99602 5.05963
5.14282 5.18157 5.28627 5.40852 5.45526 5.64331 5.96878 6.07278
6.15697 6.34431 6.66100 6.85446 7.38547 8.90562
Molecular weight = 212.16amu
Principal moments of inertia in cm(-1)
A = 0.048332 B = 0.007473 C = 0.006867
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 579.189198 B = 3745.777281 C = 4076.314216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 N -0.541 5.541
3 C 0.212 3.788
4 C -0.526 4.526
5 H 0.064 0.936
6 C 0.000 4.000
7 N -0.935 5.935
8 Si 0.972 3.028
9 H -0.273 1.273
10 H -0.282 1.282
11 H -0.263 1.263
12 C 0.086 3.914
13 H 0.060 0.940
14 C -0.106 4.106
15 C -0.109 4.109
16 C 0.054 3.946
17 N -0.554 5.554
18 C 0.026 3.974
19 C 0.039 3.961
20 H 0.081 0.919
21 H 0.056 0.944
22 H 0.010 0.990
23 H -0.004 1.004
24 H -0.035 1.035
25 H 0.264 0.736
26 H 0.070 0.930
27 H 0.065 0.935
28 H 0.066 0.934
29 H 0.096 0.904
30 H 0.095 0.905
31 H 0.033 0.967
32 H 0.025 0.975
33 H 0.055 0.945
34 H 0.091 0.909
35 H 0.031 0.969
36 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.187 -12.465 -7.666 15.221
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 N -0.264 5.264
3 C 0.085 3.915
4 C -0.565 4.565
5 H 0.082 0.918
6 C -0.198 4.198
7 N -0.575 5.575
8 Si 0.796 3.204
9 H -0.198 1.198
10 H -0.207 1.207
11 H -0.187 1.187
12 C -0.023 4.023
13 H 0.078 0.922
14 C -0.143 4.143
15 C -0.147 4.147
16 C -0.073 4.073
17 N -0.279 5.279
18 C -0.122 4.122
19 C -0.090 4.090
20 H 0.100 0.900
21 H 0.075 0.925
22 H 0.029 0.971
23 H 0.014 0.986
24 H -0.017 1.017
25 H 0.073 0.927
26 H 0.089 0.911
27 H 0.083 0.917
28 H 0.084 0.916
29 H 0.115 0.885
30 H 0.113 0.887
31 H 0.051 0.949
32 H 0.044 0.956
33 H 0.074 0.926
34 H 0.109 0.891
35 H 0.049 0.951
36 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -3.446 -12.540 -7.227 14.878
hybrid contribution -1.025 1.589 -0.168 1.898
sum -4.471 -10.951 -7.395 13.950
Atomic orbital electron populations
1.22273 0.87926 1.01351 0.99574 1.62321 1.08161 1.15386 1.40487
1.19314 0.93220 0.83987 0.94953 1.21513 1.34975 0.97559 1.02423
0.91794 1.25953 0.94985 0.98059 1.00801 1.70100 1.39331 1.11887
1.36214 0.85351 0.79001 0.77204 0.78864 1.19827 1.20742 1.18728
1.21764 0.98858 0.94739 0.86924 0.92192 1.21625 1.00778 0.92635
0.99308 1.21578 1.01473 0.99194 0.92499 1.22228 0.97440 0.87927
0.99754 1.61912 1.60461 1.03293 1.02262 1.22388 0.98620 0.99982
0.91224 1.22579 0.96939 0.96908 0.92617 0.90039 0.92533 0.97107
0.98605 1.01746 0.92710 0.91105 0.91659 0.91561 0.88522 0.88696
0.94913 0.95629 0.92580 0.89062 0.95102 0.94062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.46 8.64 127.69 1.10 2.56 16
2 N -0.54 -24.31 4.74 -901.30 -4.27 -28.59 16
3 C 0.21 11.73 4.16 85.56 0.36 12.09 16
4 C -0.53 -30.70 8.46 25.60 0.22 -30.48 16
5 H 0.06 3.64 7.12 -2.91 -0.02 3.62 16
6 C 0.00 -0.01 5.46 84.65 0.46 0.46 16
7 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16
8 Si 0.97 45.05 29.54 68.60 2.03 47.08 16
9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16
12 C 0.09 3.28 2.39 44.97 0.11 3.38 16
13 H 0.06 2.52 8.03 -2.39 -0.02 2.50 16
14 C -0.11 -3.02 5.14 30.67 0.16 -2.86 16
15 C -0.11 -2.46 6.09 30.65 0.19 -2.27 16
16 C 0.05 1.24 5.46 86.33 0.47 1.71 16
17 N -0.55 -16.50 4.91 -922.57 -4.53 -21.03 16
18 C 0.03 0.65 9.59 127.69 1.22 1.87 16
19 C 0.04 1.44 4.06 86.32 0.35 1.79 16
20 H 0.08 2.64 6.28 -2.39 -0.02 2.62 16
21 H 0.06 2.41 6.76 -2.38 -0.02 2.39 16
22 H 0.01 0.42 6.27 -2.39 -0.01 0.40 16
23 H 0.00 -0.25 8.00 -2.39 -0.02 -0.27 16
24 H -0.04 -2.10 6.96 -2.39 -0.02 -2.11 16
25 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16
26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
27 H 0.06 1.77 6.31 -2.38 -0.02 1.76 16
28 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16
29 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16
30 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16
31 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16
32 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16
33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
34 H 0.09 1.79 8.10 -2.38 -0.02 1.77 16
35 H 0.03 1.12 6.34 -2.39 -0.02 1.10 16
36 H 0.04 1.79 6.78 -2.39 -0.02 1.77 16
Total: -1.00 -65.62 275.46 -0.83 -66.46
By element:
Atomic # 1 Polarization: 4.15 SS G_CDS: 1.03 Total: 5.18 kcal
Atomic # 6 Polarization: -16.39 SS G_CDS: 4.64 Total: -11.76 kcal
Atomic # 7 Polarization: -98.44 SS G_CDS: -8.52 Total: -106.96 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal
Total: -65.62 -0.83 -66.46 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000053245233.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.711 kcal
(2) G-P(sol) polarization free energy of solvation -65.624 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.913 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.744 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds