Wall clock time and date at job start Sun Mar 29 2020 21:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47055 * 2 1 4 4 C 1.50700 * 109.47127 * 120.00423 * 2 1 3 5 5 H 1.07995 * 120.00332 * 119.99911 * 4 2 1 6 6 C 1.37880 * 119.99799 * 299.99504 * 4 2 1 7 7 N 1.31509 * 120.00094 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00098 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47506 * 89.99861 * 8 6 4 10 10 H 1.48500 * 109.47452 * 209.99868 * 8 6 4 11 11 H 1.48506 * 109.47445 * 329.99797 * 8 6 4 12 12 N 1.46899 * 109.46817 * 240.00018 * 2 1 3 13 13 C 1.46903 * 111.00041 * 84.99860 * 12 2 1 14 14 C 1.52999 * 109.47428 * 179.97438 * 13 12 2 15 15 N 1.46905 * 109.47137 * 180.02562 * 14 13 12 16 16 C 1.48560 * 110.99577 * 169.99983 * 15 14 13 17 17 C 1.54378 * 104.69549 * 200.89794 * 16 15 14 18 18 C 1.54571 * 104.91190 * 23.88545 * 17 16 15 19 19 C 1.48555 * 110.99889 * 54.58463 * 15 14 13 20 20 H 1.09004 * 109.46722 * 299.99719 * 1 2 3 21 21 H 1.08998 * 109.47393 * 59.99613 * 1 2 3 22 22 H 1.08994 * 109.47055 * 179.97438 * 1 2 3 23 23 H 0.96996 * 120.00321 * 179.97438 * 7 6 4 24 24 H 1.00895 * 111.00083 * 208.95497 * 12 2 1 25 25 H 1.09009 * 109.46801 * 60.00086 * 13 12 2 26 26 H 1.08997 * 109.47400 * 300.00095 * 13 12 2 27 27 H 1.09000 * 109.46805 * 60.00321 * 14 13 12 28 28 H 1.08997 * 109.46980 * 300.00441 * 14 13 12 29 29 H 1.09002 * 110.41441 * 319.73871 * 16 15 14 30 30 H 1.09002 * 110.41248 * 82.06172 * 16 15 14 31 31 H 1.09006 * 110.32557 * 142.80924 * 17 16 15 32 32 H 1.08996 * 110.32821 * 265.02105 * 17 16 15 33 33 H 1.08995 * 110.29758 * 241.08109 * 18 17 16 34 34 H 1.09004 * 110.40408 * 118.93657 * 18 17 16 35 35 H 1.09005 * 110.41154 * 277.81401 * 19 15 14 36 36 H 1.08998 * 110.41848 * 40.13562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6250 1.2790 2.6542 9 1 -0.8026 0.8727 2.6999 10 1 0.9761 1.9950 3.9069 11 1 0.8472 2.1765 1.4921 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5961 -0.5328 -3.5743 15 7 2.6594 0.3825 -4.7216 16 6 3.3741 -0.2439 -5.8634 17 6 3.8304 0.9432 -6.7385 18 6 3.8936 2.1483 -5.7726 19 6 3.4698 1.5850 -4.3991 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.9042 -0.5275 4.4375 24 1 2.9172 -1.1205 -1.0288 25 1 2.7589 1.0462 -2.1182 26 1 1.0870 0.6163 -2.5525 27 1 1.9200 -1.3566 -3.8031 28 1 3.5915 -0.9262 -3.3684 29 1 4.2365 -0.8083 -5.5087 30 1 2.7007 -0.8925 -6.4238 31 1 4.8144 0.7443 -7.1632 32 1 3.1058 1.1299 -7.5311 33 1 3.2006 2.9263 -6.0929 34 1 4.9084 2.5430 -5.7232 35 1 2.8679 2.3153 -3.8582 36 1 4.3460 1.3072 -3.8134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054127044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:58 Heat of formation + Delta-G solvation = 4.613412 kcal Electronic energy + Delta-G solvation = -14312.616358 eV Core-core repulsion = 12024.503484 eV Total energy + Delta-G solvation = -2288.112873 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.96297 -36.20467 -33.23569 -31.81708 -29.65648 -28.87745 -26.23345 -24.94134 -22.44408 -21.00496 -20.21834 -19.82137 -16.72977 -16.10053 -15.93033 -15.41793 -14.50298 -14.20195 -13.61957 -13.43675 -13.06776 -12.62091 -12.52118 -12.14686 -11.91882 -11.50350 -11.49493 -11.26356 -11.15996 -10.75784 -10.62684 -10.58773 -10.40960 -10.07680 -9.47676 -9.01581 -8.60891 -8.45966 -7.49685 -6.10197 -4.10074 3.27583 3.36729 3.39302 3.98376 4.38712 4.55855 4.64339 4.86937 5.16834 5.21196 5.23859 5.37037 5.45351 5.57840 5.63119 5.66210 5.71846 5.86411 5.92860 5.98218 6.04785 6.26466 6.32670 6.46434 6.55919 6.73171 6.83385 6.86384 7.09582 7.40201 7.57959 7.93954 8.34311 8.61514 8.94165 9.52162 11.02809 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057247 B = 0.005903 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.989944 B = 4742.537233 C = 4864.959603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.183 3.817 3 H 0.000 1.000 4 C -0.520 4.520 5 H 0.078 0.922 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.679 5.679 13 C 0.060 3.940 14 C 0.048 3.952 15 N -0.511 5.511 16 C 0.031 3.969 17 C -0.124 4.124 18 C -0.125 4.125 19 C 0.029 3.971 20 H 0.036 0.964 21 H 0.026 0.974 22 H 0.058 0.942 23 H 0.264 0.736 24 H 0.337 0.663 25 H 0.020 0.980 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.659 4.691 -17.423 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.074 3.926 3 H 0.017 0.983 4 C -0.559 4.559 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.311 5.311 13 C -0.070 4.070 14 C -0.080 4.080 15 N -0.236 5.236 16 C -0.097 4.097 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.099 4.099 20 H 0.055 0.945 21 H 0.045 0.955 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.155 0.845 25 H 0.038 0.962 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.480 4.565 -17.506 18.152 hybrid contribution 0.975 1.044 0.785 1.630 sum 2.456 5.609 -16.721 17.807 Atomic orbital electron populations 1.22063 0.98638 1.01045 0.97729 1.19511 0.91832 0.92879 0.88335 0.98274 1.21111 1.32350 1.13760 0.88637 0.90380 1.24931 0.95685 0.96747 0.95728 1.69888 1.45573 1.40294 0.97929 0.86791 0.80733 0.83531 0.76719 1.20429 1.22537 1.19407 1.60444 1.32774 1.32710 1.05149 1.21959 1.00438 0.94015 0.90623 1.22290 0.99918 0.95678 0.90135 1.65400 1.45945 1.06043 1.06167 1.23116 0.96918 0.96641 0.93038 1.22336 1.01037 0.94740 0.98064 1.22354 1.01175 0.97975 0.94827 1.23132 0.96218 0.93844 0.96691 0.94532 0.95477 0.92320 0.92567 0.84496 0.96192 0.91051 0.89792 0.94927 0.93932 0.90217 0.91571 0.91138 0.91142 0.91570 0.90009 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.89 37.16 0.33 -2.83 16 2 C 0.18 4.46 2.19 -68.86 -0.15 4.31 16 3 H 0.00 -0.01 6.86 -51.93 -0.36 -0.36 16 4 C -0.52 -14.77 9.17 -34.44 -0.32 -15.08 16 5 H 0.08 2.38 7.86 -52.49 -0.41 1.96 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 8 Si 0.89 22.36 24.37 -169.99 -4.14 18.22 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 12 N -0.68 -14.22 6.30 -107.95 -0.68 -14.90 16 13 C 0.06 1.05 5.20 -3.82 -0.02 1.03 16 14 C 0.05 0.72 5.32 -3.82 -0.02 0.70 16 15 N -0.51 -6.87 5.49 -229.97 -1.26 -8.13 16 16 C 0.03 0.34 6.48 -2.18 -0.01 0.33 16 17 C -0.12 -1.14 7.02 -25.18 -0.18 -1.32 16 18 C -0.13 -1.23 7.01 -25.18 -0.18 -1.41 16 19 C 0.03 0.36 5.11 -2.19 -0.01 0.35 16 20 H 0.04 0.86 3.27 -51.93 -0.17 0.69 16 21 H 0.03 0.55 7.45 -51.93 -0.39 0.16 16 22 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.34 7.01 8.22 -39.29 -0.32 6.68 16 25 H 0.02 0.36 6.75 -51.92 -0.35 0.01 16 26 H 0.07 1.30 7.44 -51.93 -0.39 0.92 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.03 0.48 7.88 -51.93 -0.41 0.07 16 29 H 0.04 0.46 7.82 -51.93 -0.41 0.06 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.05 7.67 -51.93 -0.40 0.66 16 36 H 0.04 0.56 7.99 -51.93 -0.42 0.14 16 LS Contribution 276.98 15.07 4.17 4.17 Total: -1.00 -29.92 276.98 -7.94 -37.86 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.15 Total: 1.54 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.65 Total: -11.94 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -1.17 Total: -49.86 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.92 -7.94 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054127044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.477 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds