Wall clock time and date at job start Sun Mar 29 2020 21:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47055 * 2 1 4 4 C 1.50700 * 109.47127 * 120.00423 * 2 1 3 5 5 H 1.07995 * 120.00332 * 119.99911 * 4 2 1 6 6 C 1.37880 * 119.99799 * 299.99504 * 4 2 1 7 7 N 1.31509 * 120.00094 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00098 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47506 * 89.99861 * 8 6 4 10 10 H 1.48500 * 109.47452 * 209.99868 * 8 6 4 11 11 H 1.48506 * 109.47445 * 329.99797 * 8 6 4 12 12 N 1.46899 * 109.46817 * 240.00018 * 2 1 3 13 13 C 1.46903 * 111.00041 * 84.99860 * 12 2 1 14 14 C 1.52999 * 109.47428 * 179.97438 * 13 12 2 15 15 N 1.46905 * 109.47137 * 180.02562 * 14 13 12 16 16 C 1.48560 * 110.99577 * 169.99983 * 15 14 13 17 17 C 1.54378 * 104.69549 * 200.89794 * 16 15 14 18 18 C 1.54571 * 104.91190 * 23.88545 * 17 16 15 19 19 C 1.48555 * 110.99889 * 54.58463 * 15 14 13 20 20 H 1.09004 * 109.46722 * 299.99719 * 1 2 3 21 21 H 1.08998 * 109.47393 * 59.99613 * 1 2 3 22 22 H 1.08994 * 109.47055 * 179.97438 * 1 2 3 23 23 H 0.96996 * 120.00321 * 179.97438 * 7 6 4 24 24 H 1.00895 * 111.00083 * 208.95497 * 12 2 1 25 25 H 1.09009 * 109.46801 * 60.00086 * 13 12 2 26 26 H 1.08997 * 109.47400 * 300.00095 * 13 12 2 27 27 H 1.09000 * 109.46805 * 60.00321 * 14 13 12 28 28 H 1.08997 * 109.46980 * 300.00441 * 14 13 12 29 29 H 1.09002 * 110.41441 * 319.73871 * 16 15 14 30 30 H 1.09002 * 110.41248 * 82.06172 * 16 15 14 31 31 H 1.09006 * 110.32557 * 142.80924 * 17 16 15 32 32 H 1.08996 * 110.32821 * 265.02105 * 17 16 15 33 33 H 1.08995 * 110.29758 * 241.08109 * 18 17 16 34 34 H 1.09004 * 110.40408 * 118.93657 * 18 17 16 35 35 H 1.09005 * 110.41154 * 277.81401 * 19 15 14 36 36 H 1.08998 * 110.41848 * 40.13562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6250 1.2790 2.6542 9 1 -0.8026 0.8727 2.6999 10 1 0.9761 1.9950 3.9069 11 1 0.8472 2.1765 1.4921 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5961 -0.5328 -3.5743 15 7 2.6594 0.3825 -4.7216 16 6 3.3741 -0.2439 -5.8634 17 6 3.8304 0.9432 -6.7385 18 6 3.8936 2.1483 -5.7726 19 6 3.4698 1.5850 -4.3991 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.9042 -0.5275 4.4375 24 1 2.9172 -1.1205 -1.0288 25 1 2.7589 1.0462 -2.1182 26 1 1.0870 0.6163 -2.5525 27 1 1.9200 -1.3566 -3.8031 28 1 3.5915 -0.9262 -3.3684 29 1 4.2365 -0.8083 -5.5087 30 1 2.7007 -0.8925 -6.4238 31 1 4.8144 0.7443 -7.1632 32 1 3.1058 1.1299 -7.5311 33 1 3.2006 2.9263 -6.0929 34 1 4.9084 2.5430 -5.7232 35 1 2.8679 2.3153 -3.8582 36 1 4.3460 1.3072 -3.8134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054127044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:58 Heat of formation + Delta-G solvation = -18.219498 kcal Electronic energy + Delta-G solvation = -14313.606467 eV Core-core repulsion = 12024.503484 eV Total energy + Delta-G solvation = -2289.102982 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.96341 -37.90190 -34.93134 -33.46513 -31.20385 -29.79404 -27.69569 -26.92397 -23.68302 -21.99762 -21.70367 -21.20152 -18.84246 -17.40939 -17.00752 -16.84743 -16.02017 -15.52003 -15.14164 -14.93050 -14.79808 -14.12328 -13.78827 -13.63609 -13.28650 -12.91022 -12.87831 -12.58439 -12.33895 -12.15937 -12.10016 -11.89691 -11.84953 -11.43940 -11.35394 -11.07832 -10.79507 -9.49478 -9.21170 -8.34058 -6.39097 1.29726 1.33672 1.44491 2.28827 2.89878 3.01477 3.55707 3.76341 3.84310 4.03371 4.21337 4.25884 4.34964 4.48849 4.54083 4.64870 4.68894 4.71674 4.84143 4.86471 4.88780 4.98360 4.99117 5.04885 5.09479 5.21725 5.29847 5.46491 5.59230 5.87641 5.94476 6.04029 6.45696 6.59831 6.77878 7.27740 8.82380 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057247 B = 0.005903 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.989944 B = 4742.537233 C = 4864.959603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.187 3.813 3 H -0.006 1.006 4 C -0.527 4.527 5 H 0.041 0.959 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.953 3.047 9 H -0.264 1.264 10 H -0.295 1.295 11 H -0.253 1.253 12 N -0.681 5.681 13 C 0.066 3.934 14 C 0.060 3.940 15 N -0.522 5.522 16 C 0.027 3.973 17 C -0.119 4.119 18 C -0.121 4.121 19 C 0.024 3.976 20 H 0.032 0.968 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.268 0.732 24 H 0.335 0.665 25 H 0.019 0.981 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 6.093 -19.334 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.077 3.923 3 H 0.012 0.988 4 C -0.565 4.565 5 H 0.059 0.941 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.223 1.223 11 H -0.177 1.177 12 N -0.313 5.313 13 C -0.064 4.064 14 C -0.069 4.069 15 N -0.246 5.246 16 C -0.101 4.101 17 C -0.157 4.157 18 C -0.160 4.160 19 C -0.104 4.104 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.153 0.847 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.895 5.964 -19.453 20.366 hybrid contribution 1.232 0.536 1.336 1.895 sum 2.126 6.501 -18.117 19.365 Atomic orbital electron populations 1.21980 0.97199 1.01091 0.98870 1.19370 0.92920 0.92052 0.87932 0.98821 1.21384 1.31669 1.12794 0.90694 0.94070 1.25786 0.97146 1.00008 0.95278 1.70025 1.47400 1.42389 0.98638 0.85791 0.79294 0.79770 0.77174 1.19019 1.22300 1.17743 1.60411 1.32760 1.33200 1.04885 1.21949 1.00432 0.93666 0.90352 1.22085 0.99638 0.95501 0.89690 1.65399 1.47013 1.06219 1.06014 1.23225 0.96909 0.97512 0.92440 1.22348 1.02211 0.93399 0.97709 1.22358 1.02055 0.98290 0.93253 1.23184 0.95625 0.93397 0.98214 0.94919 0.92685 0.92902 0.92327 0.84730 0.96291 0.91273 0.90022 0.94932 0.93913 0.89575 0.89872 0.90302 0.90609 0.90224 0.90907 0.94571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.89 71.98 0.64 -5.25 16 2 C 0.19 8.95 2.19 44.17 0.10 9.05 16 3 H -0.01 -0.28 6.86 -2.39 -0.02 -0.30 16 4 C -0.53 -30.38 9.17 25.60 0.23 -30.15 16 5 H 0.04 2.61 7.86 -2.91 -0.02 2.58 16 6 C 0.02 0.93 5.45 84.66 0.46 1.39 16 7 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 8 Si 0.95 45.44 24.37 68.60 1.67 47.11 16 9 H -0.26 -12.00 6.87 99.48 0.68 -11.32 16 10 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 11 H -0.25 -11.35 6.53 99.48 0.65 -10.70 16 12 N -0.68 -28.21 6.30 -495.43 -3.12 -31.33 16 13 C 0.07 2.24 5.20 86.30 0.45 2.69 16 14 C 0.06 1.70 5.32 86.30 0.46 2.16 16 15 N -0.52 -13.12 5.49 -881.50 -4.84 -17.96 16 16 C 0.03 0.53 6.48 86.45 0.56 1.09 16 17 C -0.12 -1.85 7.02 31.60 0.22 -1.62 16 18 C -0.12 -2.08 7.01 31.60 0.22 -1.86 16 19 C 0.02 0.55 5.11 86.45 0.44 0.99 16 20 H 0.03 1.45 3.27 -2.38 -0.01 1.44 16 21 H 0.05 2.09 7.45 -2.39 -0.02 2.08 16 22 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.34 14.07 8.22 -89.70 -0.74 13.33 16 25 H 0.02 0.66 6.75 -2.38 -0.02 0.64 16 26 H 0.07 2.40 7.44 -2.39 -0.02 2.38 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.03 0.92 7.88 -2.39 -0.02 0.90 16 29 H 0.04 0.85 7.82 -2.39 -0.02 0.83 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.07 1.79 7.67 -2.38 -0.02 1.77 16 36 H 0.04 0.88 7.99 -2.39 -0.02 0.86 16 Total: -1.00 -63.63 276.98 -1.98 -65.62 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.22 Total: 16.91 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.79 Total: -21.51 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -7.66 Total: -108.12 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.67 Total: 47.11 kcal Total: -63.63 -1.98 -65.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054127044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.397 kcal (2) G-P(sol) polarization free energy of solvation -63.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds