Wall clock time and date at job start Sun Mar 29 2020 22:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00155 * 2 1 4 4 H 1.48504 * 109.47212 * 270.00480 * 3 2 1 5 5 H 1.48499 * 109.47312 * 30.00290 * 3 2 1 6 6 H 1.48502 * 109.47354 * 150.00303 * 3 2 1 7 7 C 1.37875 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99956 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47015 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00200 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99688 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00150 * 180.02562 * 12 11 10 15 15 H 1.09000 * 110.56154 * 302.67542 * 14 12 11 16 16 C 1.54510 * 110.50940 * 180.02562 * 14 12 11 17 17 C 1.54477 * 104.18108 * 241.28242 * 16 14 12 18 18 O 1.44642 * 104.69773 * 336.19290 * 17 16 14 19 19 C 1.44415 * 105.37338 * 40.34325 * 18 17 16 20 20 H 0.97001 * 119.99569 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46615 * 60.00073 * 9 7 2 22 22 H 1.08998 * 109.47139 * 300.00526 * 9 7 2 23 23 H 1.08996 * 109.47601 * 60.00282 * 10 9 7 24 24 H 1.08999 * 109.47222 * 299.99732 * 10 9 7 25 25 H 0.97001 * 119.99885 * 359.97438 * 11 10 9 26 26 H 1.09002 * 110.51305 * 359.97438 * 16 14 12 27 27 H 1.08994 * 110.51141 * 122.57102 * 16 14 12 28 28 H 1.09006 * 110.37498 * 94.92285 * 17 16 14 29 29 H 1.09000 * 110.37254 * 217.25804 * 17 16 14 30 30 H 1.08998 * 110.37627 * 200.73568 * 19 18 17 31 31 H 1.09003 * 110.37369 * 78.39849 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 7 5.4864 -2.6367 -0.0009 12 6 6.1603 -3.8039 -0.0014 13 8 5.5538 -4.8542 -0.0013 14 6 7.6673 -3.8040 -0.0007 15 1 8.0505 -3.2525 -0.8593 16 6 8.2086 -5.2512 -0.0020 17 6 9.0146 -5.3549 1.3117 18 8 9.3764 -3.9908 1.6290 19 6 8.2081 -3.2020 1.3152 20 1 -0.4849 0.8401 0.0004 21 1 3.8751 -0.6805 0.8889 22 1 3.8745 -0.6801 -0.8911 23 1 3.6578 -3.1507 -0.8907 24 1 3.6584 -3.1502 0.8893 25 1 5.9715 -1.7967 -0.0014 26 1 7.3862 -5.9666 -0.0026 27 1 8.8575 -5.4154 -0.8622 28 1 8.3963 -5.7769 2.1040 29 1 9.9075 -5.9619 1.1621 30 1 8.4833 -2.1575 1.1697 31 1 7.4650 -3.2927 2.1074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137785.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:58 Heat of formation + Delta-G solvation = -96.894334 kcal Electronic energy + Delta-G solvation = -14001.358634 eV Core-core repulsion = 11475.292298 eV Total energy + Delta-G solvation = -2526.066336 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27315 -38.32989 -35.10160 -32.91290 -32.30129 -30.39265 -29.12921 -25.18006 -23.42257 -22.17637 -20.85109 -19.73433 -17.49904 -16.94509 -16.61638 -15.60212 -15.35851 -14.96995 -14.62109 -14.21287 -13.83295 -13.15243 -13.00379 -12.64145 -12.24037 -11.61949 -11.54390 -11.48555 -11.24331 -10.93108 -10.44077 -10.29945 -10.01572 -9.99997 -9.56230 -9.33681 -8.69799 -8.60488 -6.14206 -4.14715 2.77839 3.22737 3.30487 3.31510 3.40216 3.84822 4.30186 4.34737 4.63556 4.77858 4.95776 5.08295 5.18652 5.21032 5.47806 5.55345 5.59115 5.80378 5.91425 6.05990 6.14499 6.50231 6.53576 6.66941 7.07704 7.18035 7.62655 7.79811 8.38589 8.46146 8.89861 9.45717 10.98848 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058204 B = 0.005856 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.954070 B = 4780.077923 C = 5111.501009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.723 5.723 12 C 0.514 3.486 13 O -0.543 6.543 14 C -0.147 4.147 15 H 0.108 0.892 16 C -0.147 4.147 17 C 0.045 3.955 18 O -0.375 6.375 19 C 0.057 3.943 20 H 0.265 0.735 21 H 0.022 0.978 22 H 0.018 0.982 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.397 0.603 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.761 -5.113 0.742 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.373 5.373 12 C 0.298 3.702 13 O -0.420 6.420 14 C -0.169 4.169 15 H 0.126 0.874 16 C -0.184 4.184 17 C -0.032 4.032 18 O -0.294 6.294 19 C -0.020 4.020 20 H 0.075 0.925 21 H 0.040 0.960 22 H 0.036 0.964 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.230 0.770 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.328 -5.671 0.832 18.251 hybrid contribution 0.285 1.338 -0.188 1.381 sum 17.613 -4.332 0.644 18.149 Atomic orbital electron populations 1.69907 1.06306 1.27096 1.50304 1.25001 0.94767 0.99162 0.94318 0.86748 0.80253 0.83523 0.78519 1.20205 1.21226 1.19091 1.20911 0.88621 0.94914 1.51811 0.90634 1.19797 0.98063 0.91267 0.96864 1.21544 0.75868 1.00245 1.01689 1.46339 1.09300 1.07787 1.73873 1.20227 0.89128 0.84249 0.76563 1.90667 1.69944 1.31331 1.50096 1.22728 0.93560 0.99397 1.01207 0.87405 1.22948 1.01050 0.95903 0.98546 1.23507 0.99420 0.84461 0.95814 1.89137 1.35038 1.18154 1.87061 1.23360 0.88159 0.96361 0.94122 0.92510 0.95965 0.96406 0.91880 0.91871 0.76992 0.87953 0.90325 0.91953 0.88885 0.88207 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.50 4.16 -27.89 -0.12 -0.61 16 10 C 0.13 2.56 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -11.38 5.55 -60.29 -0.33 -11.71 16 12 C 0.51 7.98 7.01 -10.99 -0.08 7.90 16 13 O -0.54 -10.51 15.28 5.55 0.08 -10.42 16 14 C -0.15 -1.69 3.51 -90.21 -0.32 -2.00 16 15 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 16 C -0.15 -1.59 6.67 -25.16 -0.17 -1.76 16 17 C 0.04 0.45 7.65 37.93 0.29 0.74 16 18 O -0.38 -4.50 11.65 -35.23 -0.41 -4.91 16 19 C 0.06 0.62 7.17 37.93 0.27 0.89 16 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 22 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 23 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.40 5.10 8.47 -40.82 -0.35 4.75 16 26 H 0.10 1.30 6.50 -51.93 -0.34 0.96 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 LS Contribution 262.47 15.07 3.96 3.96 Total: -1.00 -32.07 262.47 -5.57 -37.64 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.40 Total: 0.98 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.57 Total: -5.29 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.44 Total: -38.10 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.33 Total: -15.33 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.07 -5.57 -37.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137785.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.250 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds