Wall clock time and date at job start Sun Mar 29 2020 22:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00155 * 2 1 4 4 H 1.48504 * 109.47212 * 270.00480 * 3 2 1 5 5 H 1.48499 * 109.47312 * 30.00290 * 3 2 1 6 6 H 1.48502 * 109.47354 * 150.00303 * 3 2 1 7 7 C 1.37875 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99956 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47015 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00200 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99688 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00150 * 180.02562 * 12 11 10 15 15 H 1.09000 * 110.56154 * 302.67542 * 14 12 11 16 16 C 1.54510 * 110.50940 * 180.02562 * 14 12 11 17 17 C 1.54477 * 104.18108 * 241.28242 * 16 14 12 18 18 O 1.44642 * 104.69773 * 336.19290 * 17 16 14 19 19 C 1.44415 * 105.37338 * 40.34325 * 18 17 16 20 20 H 0.97001 * 119.99569 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46615 * 60.00073 * 9 7 2 22 22 H 1.08998 * 109.47139 * 300.00526 * 9 7 2 23 23 H 1.08996 * 109.47601 * 60.00282 * 10 9 7 24 24 H 1.08999 * 109.47222 * 299.99732 * 10 9 7 25 25 H 0.97001 * 119.99885 * 359.97438 * 11 10 9 26 26 H 1.09002 * 110.51305 * 359.97438 * 16 14 12 27 27 H 1.08994 * 110.51141 * 122.57102 * 16 14 12 28 28 H 1.09006 * 110.37498 * 94.92285 * 17 16 14 29 29 H 1.09000 * 110.37254 * 217.25804 * 17 16 14 30 30 H 1.08998 * 110.37627 * 200.73568 * 19 18 17 31 31 H 1.09003 * 110.37369 * 78.39849 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 7 5.4864 -2.6367 -0.0009 12 6 6.1603 -3.8039 -0.0014 13 8 5.5538 -4.8542 -0.0013 14 6 7.6673 -3.8040 -0.0007 15 1 8.0505 -3.2525 -0.8593 16 6 8.2086 -5.2512 -0.0020 17 6 9.0146 -5.3549 1.3117 18 8 9.3764 -3.9908 1.6290 19 6 8.2081 -3.2020 1.3152 20 1 -0.4849 0.8401 0.0004 21 1 3.8751 -0.6805 0.8889 22 1 3.8745 -0.6801 -0.8911 23 1 3.6578 -3.1507 -0.8907 24 1 3.6584 -3.1502 0.8893 25 1 5.9715 -1.7967 -0.0014 26 1 7.3862 -5.9666 -0.0026 27 1 8.8575 -5.4154 -0.8622 28 1 8.3963 -5.7769 2.1040 29 1 9.9075 -5.9619 1.1621 30 1 8.4833 -2.1575 1.1697 31 1 7.4650 -3.2927 2.1074 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137785.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:57 Heat of formation + Delta-G solvation = -121.534428 kcal Electronic energy + Delta-G solvation = -14002.427109 eV Core-core repulsion = 11475.292298 eV Total energy + Delta-G solvation = -2527.134811 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.37754 -39.41542 -36.69516 -34.83079 -33.37404 -32.00102 -30.14655 -26.93576 -24.42162 -23.30896 -22.54249 -20.93588 -19.03503 -18.56646 -17.52489 -16.75783 -16.60599 -16.22764 -16.04550 -15.89975 -15.14989 -14.67283 -14.49098 -13.89783 -13.36466 -13.22023 -13.02194 -12.55010 -12.37035 -12.17462 -12.06930 -11.76596 -11.76476 -11.52708 -10.86929 -10.85157 -10.79365 -10.10285 -8.30683 -6.38336 1.39389 1.42097 1.53205 1.54760 2.17354 2.36693 2.98738 3.04681 3.40641 3.78416 3.85689 4.11115 4.25798 4.28524 4.37776 4.41285 4.71769 4.73470 4.75918 4.82567 5.02646 5.03094 5.14884 5.39167 5.41299 5.62962 5.71830 6.21061 6.55705 6.70109 7.22041 7.26634 8.86244 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058204 B = 0.005856 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.954070 B = 4780.077923 C = 5111.501009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.013 4.013 10 C 0.143 3.857 11 N -0.713 5.713 12 C 0.513 3.487 13 O -0.586 6.586 14 C -0.138 4.138 15 H 0.139 0.861 16 C -0.148 4.148 17 C 0.043 3.957 18 O -0.387 6.387 19 C 0.057 3.943 20 H 0.268 0.732 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.415 0.585 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.974 -3.479 0.523 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.051 4.051 10 C 0.019 3.981 11 N -0.364 5.364 12 C 0.300 3.700 13 O -0.467 6.467 14 C -0.159 4.159 15 H 0.156 0.844 16 C -0.185 4.185 17 C -0.033 4.033 18 O -0.305 6.305 19 C -0.020 4.020 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.252 0.748 26 H 0.097 0.903 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.135 0.865 30 H 0.146 0.854 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.588 -4.038 0.615 20.989 hybrid contribution -0.784 0.704 -0.116 1.060 sum 19.804 -3.334 0.500 20.089 Atomic orbital electron populations 1.70083 1.08659 1.28461 1.51957 1.26095 0.95675 1.03926 0.93607 0.85531 0.79718 0.77222 0.79362 1.18952 1.21358 1.15770 1.21267 0.91693 0.93325 1.51651 0.95446 1.19656 0.94353 0.92874 0.98195 1.21043 0.78636 0.98481 0.99918 1.46076 1.07354 1.09124 1.73832 1.20983 0.90924 0.83171 0.74941 1.90660 1.71315 1.32913 1.51806 1.22767 0.89719 1.00460 1.02946 0.84362 1.22971 1.00716 0.94946 0.99911 1.23615 1.00328 0.84198 0.95178 1.89133 1.35385 1.18839 1.87191 1.23455 0.87731 0.97688 0.93095 0.92323 0.94348 0.94472 0.93802 0.93888 0.74775 0.90284 0.88084 0.92664 0.86511 0.85388 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 2 C 0.00 0.23 5.47 84.65 0.46 0.69 16 3 Si 0.96 41.64 27.47 68.60 1.88 43.53 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.23 -8.95 6.54 99.48 0.65 -8.30 16 7 C -0.54 -30.62 9.66 25.60 0.25 -30.37 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.57 4.16 29.85 0.12 -0.44 16 10 C 0.14 5.70 5.61 86.38 0.48 6.18 16 11 N -0.71 -21.03 5.55 -463.06 -2.57 -23.60 16 12 C 0.51 15.22 7.01 87.66 0.61 15.84 16 13 O -0.59 -22.88 15.28 -3.04 -0.05 -22.93 16 14 C -0.14 -2.75 3.51 -10.53 -0.04 -2.79 16 15 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.15 -2.88 6.67 31.61 0.21 -2.67 16 17 C 0.04 0.78 7.65 72.48 0.55 1.33 16 18 O -0.39 -8.13 11.65 -148.98 -1.74 -9.87 16 19 C 0.06 1.06 7.17 72.48 0.52 1.58 16 20 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 21 H 0.04 1.56 7.20 -2.38 -0.02 1.54 16 22 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.42 9.17 8.47 -92.71 -0.79 8.38 16 26 H 0.08 1.96 6.50 -2.39 -0.02 1.95 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.12 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.13 7.86 -2.39 -0.02 1.11 16 Total: -1.00 -71.73 262.47 1.30 -70.44 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.28 Total: 11.89 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 3.18 Total: -10.64 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -2.27 Total: -82.41 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.78 Total: -32.80 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.53 kcal Total: -71.73 1.30 -70.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137785.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.098 kcal (2) G-P(sol) polarization free energy of solvation -71.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds