Wall clock time and date at job start Sun Mar 29 2020 22:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47155 * 270.00453 * 3 2 1 5 5 H 1.48508 * 109.46801 * 30.00161 * 3 2 1 6 6 H 1.48491 * 109.47474 * 149.99929 * 3 2 1 7 7 C 1.37878 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99597 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.34767 * 120.00414 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99938 * 0.02562 * 12 11 10 14 14 C 1.50707 * 120.00177 * 180.02562 * 12 11 10 15 15 H 1.08995 * 111.01744 * 55.77551 * 14 12 11 16 16 C 1.55305 * 111.12454 * 180.02562 * 14 12 11 17 17 C 1.54382 * 102.43395 * 152.15169 * 16 14 12 18 18 O 1.43232 * 107.59109 * 338.54226 * 17 16 14 19 19 C 1.43649 * 109.97368 * 358.28680 * 18 17 16 20 20 H 0.97000 * 120.00557 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46947 * 59.99887 * 9 7 2 22 22 H 1.08995 * 109.47164 * 300.00245 * 9 7 2 23 23 H 1.08997 * 109.47372 * 60.00103 * 10 9 7 24 24 H 1.09004 * 109.47453 * 299.99720 * 10 9 7 25 25 H 0.97009 * 119.99700 * 0.02562 * 11 10 9 26 26 H 1.09002 * 110.85041 * 33.86015 * 16 14 12 27 27 H 1.09001 * 110.84389 * 270.44152 * 16 14 12 28 28 H 1.09009 * 109.82643 * 98.05629 * 17 16 14 29 29 H 1.08999 * 109.83123 * 218.93188 * 17 16 14 30 30 H 1.08999 * 110.31137 * 143.34271 * 19 18 17 31 31 H 1.09000 * 110.31061 * 265.41699 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1869 -6.0979 0.0003 13 8 3.3997 -6.0979 0.0017 14 6 1.4334 -7.4031 -0.0009 15 1 0.7433 -7.4553 -0.8429 16 6 2.4082 -8.6121 0.0005 17 6 1.5781 -9.7076 0.7034 18 8 0.5589 -9.0542 1.4688 19 6 0.6914 -7.6291 1.3469 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8902 23 1 2.8720 -3.6042 0.8905 24 1 2.8721 -3.6043 -0.8895 25 1 0.5429 -4.9308 -0.0008 26 1 3.3094 -8.3832 0.5694 27 1 2.6593 -8.9091 -1.0178 28 1 1.1208 -10.3597 -0.0409 29 1 2.2200 -10.2922 1.3625 30 1 -0.2915 -7.1586 1.3206 31 1 1.2785 -7.2314 2.1747 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137787.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:00 Heat of formation + Delta-G solvation = -101.886519 kcal Electronic energy + Delta-G solvation = -13901.239477 eV Core-core repulsion = 11374.956664 eV Total energy + Delta-G solvation = -2526.282813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.14129 -38.34756 -34.95554 -32.93643 -32.31368 -30.09909 -28.98031 -25.06238 -23.24522 -22.17724 -20.95568 -19.86947 -17.47922 -16.70241 -16.44731 -15.44435 -15.23387 -14.84126 -14.52700 -14.29986 -13.65842 -13.38346 -12.94451 -12.39840 -12.20703 -11.59982 -11.39565 -11.24457 -11.07062 -11.02437 -10.66293 -10.37741 -9.86264 -9.70238 -9.51253 -9.23502 -8.60917 -8.40685 -6.12215 -4.15348 2.83558 3.27695 3.33740 3.36891 3.44671 3.84261 4.23910 4.39589 4.74210 4.79732 5.01947 5.04151 5.21995 5.24984 5.52908 5.56947 5.66394 5.77767 6.00731 6.28310 6.29067 6.68062 6.76522 6.83099 7.47198 7.57118 7.85301 7.91896 8.23674 8.54006 8.90519 9.49809 10.99374 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.075487 B = 0.005176 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.836865 B = 5408.622791 C = 5658.390560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.719 5.719 12 C 0.516 3.484 13 O -0.547 6.547 14 C -0.149 4.149 15 H 0.111 0.889 16 C -0.137 4.137 17 C 0.051 3.949 18 O -0.383 6.383 19 C 0.065 3.935 20 H 0.262 0.738 21 H 0.022 0.978 22 H 0.023 0.977 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.398 0.602 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 -15.098 0.190 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.368 5.368 12 C 0.301 3.699 13 O -0.425 6.425 14 C -0.171 4.171 15 H 0.129 0.871 16 C -0.175 4.175 17 C -0.026 4.026 18 O -0.302 6.302 19 C -0.012 4.012 20 H 0.072 0.928 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.232 0.768 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.646 -15.053 0.317 15.070 hybrid contribution 0.066 1.116 -0.234 1.143 sum 0.712 -13.936 0.083 13.954 Atomic orbital electron populations 1.69947 1.06105 1.26934 1.50290 1.24991 0.94888 0.99425 0.94921 0.86509 0.79844 0.82970 0.78216 1.20544 1.21133 1.19719 1.21043 0.93241 0.90377 1.51491 0.92257 1.19329 0.94191 0.91116 0.97894 1.21760 0.96103 0.81458 1.00860 1.46364 1.10599 1.06558 1.73326 1.20059 0.87999 0.85004 0.76833 1.90676 1.13890 1.87620 1.50301 1.23147 0.98965 0.94233 1.00767 0.87142 1.23001 0.99056 0.92675 1.02728 1.23169 0.89594 0.95252 0.94575 1.88396 1.52782 1.17878 1.71139 1.23410 1.00813 0.82019 0.94916 0.92803 0.95926 0.95867 0.92466 0.92498 0.76787 0.88977 0.89636 0.91162 0.91221 0.88766 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16 10 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 11 N -0.72 -12.08 5.56 -60.29 -0.33 -12.42 16 12 C 0.52 8.40 7.17 -10.99 -0.08 8.32 16 13 O -0.55 -10.94 15.71 5.56 0.09 -10.85 16 14 C -0.15 -1.79 3.51 -89.22 -0.31 -2.11 16 15 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.14 -1.51 6.16 -24.78 -0.15 -1.67 16 17 C 0.05 0.50 7.80 37.88 0.30 0.80 16 18 O -0.38 -4.73 11.36 -35.23 -0.40 -5.13 16 19 C 0.07 0.75 7.27 38.49 0.28 1.03 16 20 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 21 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 22 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.40 5.72 8.47 -40.82 -0.35 5.38 16 26 H 0.09 1.17 7.36 -51.93 -0.38 0.78 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 LS Contribution 267.14 15.07 4.03 4.03 Total: -1.00 -31.32 267.14 -5.94 -37.26 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.49 Total: 0.19 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.55 Total: -4.10 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.40 Total: -37.60 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.31 Total: -15.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.32 -5.94 -37.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137787.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.623 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds