Wall clock time and date at job start Sun Mar 29 2020 22:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47155 * 270.00453 * 3 2 1 5 5 H 1.48508 * 109.46801 * 30.00161 * 3 2 1 6 6 H 1.48491 * 109.47474 * 149.99929 * 3 2 1 7 7 C 1.37878 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99597 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.34767 * 120.00414 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99938 * 0.02562 * 12 11 10 14 14 C 1.50707 * 120.00177 * 180.02562 * 12 11 10 15 15 H 1.08995 * 111.01744 * 55.77551 * 14 12 11 16 16 C 1.55305 * 111.12454 * 180.02562 * 14 12 11 17 17 C 1.54382 * 102.43395 * 152.15169 * 16 14 12 18 18 O 1.43232 * 107.59109 * 338.54226 * 17 16 14 19 19 C 1.43649 * 109.97368 * 358.28680 * 18 17 16 20 20 H 0.97000 * 120.00557 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46947 * 59.99887 * 9 7 2 22 22 H 1.08995 * 109.47164 * 300.00245 * 9 7 2 23 23 H 1.08997 * 109.47372 * 60.00103 * 10 9 7 24 24 H 1.09004 * 109.47453 * 299.99720 * 10 9 7 25 25 H 0.97009 * 119.99700 * 0.02562 * 11 10 9 26 26 H 1.09002 * 110.85041 * 33.86015 * 16 14 12 27 27 H 1.09001 * 110.84389 * 270.44152 * 16 14 12 28 28 H 1.09009 * 109.82643 * 98.05629 * 17 16 14 29 29 H 1.08999 * 109.83123 * 218.93188 * 17 16 14 30 30 H 1.08999 * 110.31137 * 143.34271 * 19 18 17 31 31 H 1.09000 * 110.31061 * 265.41699 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1869 -6.0979 0.0003 13 8 3.3997 -6.0979 0.0017 14 6 1.4334 -7.4031 -0.0009 15 1 0.7433 -7.4553 -0.8429 16 6 2.4082 -8.6121 0.0005 17 6 1.5781 -9.7076 0.7034 18 8 0.5589 -9.0542 1.4688 19 6 0.6914 -7.6291 1.3469 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8902 23 1 2.8720 -3.6042 0.8905 24 1 2.8721 -3.6043 -0.8895 25 1 0.5429 -4.9308 -0.0008 26 1 3.3094 -8.3832 0.5694 27 1 2.6593 -8.9091 -1.0178 28 1 1.1208 -10.3597 -0.0409 29 1 2.2200 -10.2922 1.3625 30 1 -0.2915 -7.1586 1.3206 31 1 1.2785 -7.2314 2.1747 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137787.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:59 Heat of formation + Delta-G solvation = -124.543415 kcal Electronic energy + Delta-G solvation = -13902.221954 eV Core-core repulsion = 11374.956664 eV Total energy + Delta-G solvation = -2527.265290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.30122 -39.49759 -36.64007 -34.85103 -33.39204 -31.64441 -30.15725 -26.89335 -24.47560 -23.23545 -22.62091 -21.14725 -18.75768 -18.36776 -17.65450 -16.84129 -16.52579 -16.42166 -16.01009 -15.60686 -14.88341 -14.46990 -14.40056 -14.31767 -13.32685 -13.20523 -12.94264 -12.57773 -12.45203 -12.31415 -12.22813 -11.92502 -11.65832 -11.47003 -10.88346 -10.61124 -10.54771 -10.06558 -8.24780 -6.35250 1.41932 1.42160 1.52928 1.53604 2.15918 2.42956 2.89286 3.10289 3.28610 3.79427 3.85701 4.13500 4.15902 4.25687 4.47269 4.49571 4.68530 4.74976 4.83929 4.86136 4.95014 5.13000 5.26752 5.47461 5.57299 5.77725 5.91670 6.15333 6.56683 6.78000 7.20523 7.34336 8.86999 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.075487 B = 0.005176 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.836865 B = 5408.622791 C = 5658.390560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.714 5.714 12 C 0.518 3.482 13 O -0.586 6.586 14 C -0.140 4.140 15 H 0.139 0.861 16 C -0.136 4.136 17 C 0.051 3.949 18 O -0.397 6.397 19 C 0.067 3.933 20 H 0.266 0.734 21 H 0.010 0.990 22 H 0.010 0.990 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.412 0.588 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.123 -15.732 -0.129 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.016 4.016 10 C 0.015 3.985 11 N -0.364 5.364 12 C 0.305 3.695 13 O -0.466 6.466 14 C -0.162 4.162 15 H 0.156 0.844 16 C -0.174 4.174 17 C -0.025 4.025 18 O -0.317 6.317 19 C -0.010 4.010 20 H 0.075 0.925 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.248 0.752 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.433 -15.712 -0.002 15.718 hybrid contribution 0.128 1.265 -0.131 1.278 sum 0.561 -14.447 -0.133 14.458 Atomic orbital electron populations 1.70045 1.07521 1.28027 1.50961 1.25844 0.95766 1.03028 0.94373 0.85462 0.78632 0.78539 0.78522 1.19762 1.20515 1.19123 1.21469 0.93564 0.91997 1.51628 0.92390 1.19141 0.94232 0.91701 0.96486 1.21244 0.95084 0.82294 0.99838 1.46179 1.11213 1.05558 1.73481 1.20761 0.87680 0.85906 0.75187 1.90661 1.15872 1.88241 1.51865 1.23153 0.99201 0.91597 1.02221 0.84361 1.23014 0.98204 0.92662 1.03527 1.23314 0.89312 0.94884 0.95030 1.88387 1.53510 1.17996 1.71777 1.23426 1.01520 0.82065 0.93983 0.92515 0.97187 0.97161 0.93571 0.93488 0.75168 0.91080 0.88078 0.88849 0.90326 0.86887 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.29 21.45 0.28 -53.49 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -30.34 9.11 25.60 0.23 -30.11 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.08 5.09 29.84 0.15 1.23 16 10 C 0.14 5.85 5.61 86.38 0.48 6.34 16 11 N -0.71 -23.55 5.56 -463.06 -2.57 -26.13 16 12 C 0.52 16.40 7.17 87.66 0.63 17.03 16 13 O -0.59 -23.41 15.71 -3.03 -0.05 -23.46 16 14 C -0.14 -3.08 3.51 -9.88 -0.03 -3.12 16 15 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.14 -2.76 6.16 31.86 0.20 -2.56 16 17 C 0.05 0.88 7.80 72.45 0.56 1.44 16 18 O -0.40 -8.89 11.36 -148.98 -1.69 -10.58 16 19 C 0.07 1.42 7.27 72.84 0.53 1.95 16 20 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 21 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 22 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 25 H 0.41 11.37 8.47 -92.70 -0.79 10.59 16 26 H 0.07 1.76 7.36 -2.39 -0.02 1.74 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.29 8.03 -2.39 -0.02 1.27 16 Total: -1.00 -66.46 267.14 1.55 -64.92 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.33 Total: 10.32 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 3.22 Total: -6.84 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.29 Total: -79.62 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.74 Total: -34.04 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.46 1.55 -64.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137787.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.627 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds