Wall clock time and date at job start Sun Mar 29 2020 22:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 H 1.09001 * 109.47400 * 54.97871 * 13 11 10 15 15 C 1.53096 * 109.47998 * 294.94770 * 13 11 10 16 16 C 1.53171 * 109.16050 * 182.40579 * 15 13 11 17 17 C 1.53176 * 109.03820 * 56.98214 * 16 15 13 18 18 C 1.53094 * 109.16188 * 303.01548 * 17 16 15 19 19 O 1.42899 * 109.48155 * 175.00210 * 13 11 10 20 20 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 22 22 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 23 23 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 24 24 H 1.09003 * 109.52061 * 302.31410 * 15 13 11 25 25 H 1.08998 * 109.52152 * 62.49942 * 15 13 11 26 26 H 1.09000 * 109.54489 * 297.10812 * 16 15 13 27 27 H 1.09000 * 109.53934 * 176.84695 * 16 15 13 28 28 H 1.09008 * 109.52011 * 183.11284 * 17 16 15 29 29 H 1.08997 * 109.57414 * 62.95349 * 17 16 15 30 30 H 1.09006 * 109.48079 * 297.62628 * 18 17 16 31 31 H 1.09001 * 109.49001 * 177.60124 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0071 12 8 6.1131 -1.8997 -0.0075 13 6 5.8273 -4.2424 -0.0133 14 1 5.3890 -4.7791 -0.8547 15 6 5.4288 -4.9305 1.2950 16 6 5.9943 -6.3540 1.3068 17 6 7.5136 -6.2896 1.1231 18 6 7.8315 -5.5490 -0.1785 19 8 7.2510 -4.2439 -0.1364 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8745 -0.6800 -0.8911 23 1 3.3695 -3.3126 -0.0010 24 1 5.8330 -4.3709 2.1386 25 1 4.3421 -4.9695 1.3697 26 1 5.5525 -6.9286 0.4927 27 1 5.7620 -6.8306 2.2591 28 1 7.9178 -7.3008 1.0749 29 1 7.9608 -5.7582 1.9631 30 1 7.4195 -6.1032 -1.0220 31 1 8.9120 -5.4628 -0.2933 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054156753.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:19 Heat of formation + Delta-G solvation = -98.106390 kcal Electronic energy + Delta-G solvation = -14277.646332 eV Core-core repulsion = 11751.527437 eV Total energy + Delta-G solvation = -2526.118895 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.89497 -38.00732 -34.38558 -33.62624 -32.43063 -31.36291 -28.04616 -25.42644 -23.92368 -22.03898 -20.49147 -19.88390 -17.59212 -16.39371 -16.32757 -15.52346 -15.00289 -14.70164 -14.35394 -14.29016 -13.83002 -13.27781 -12.78661 -12.65590 -12.29003 -12.06097 -11.47024 -11.29485 -11.14009 -11.02552 -10.76044 -10.51009 -9.96621 -9.52900 -9.50308 -9.04632 -8.78215 -8.16508 -6.22052 -4.24436 3.17794 3.27410 3.31877 3.38278 3.43235 4.32042 4.34816 4.70215 4.70969 4.79516 4.90197 5.08410 5.13588 5.27672 5.39797 5.50643 5.59917 5.68949 5.79845 5.89299 5.96089 6.17258 6.78737 7.06642 7.11171 7.26159 7.37577 8.12973 8.49099 8.74362 8.91966 9.38041 10.89804 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061173 B = 0.006618 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.606149 B = 4229.882415 C = 4544.318883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.703 5.703 11 C 0.506 3.494 12 O -0.538 6.538 13 C 0.074 3.926 14 H 0.080 0.920 15 C -0.147 4.147 16 C -0.120 4.120 17 C -0.158 4.158 18 C 0.058 3.942 19 O -0.354 6.354 20 H 0.268 0.732 21 H 0.026 0.974 22 H 0.022 0.978 23 H 0.396 0.604 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.030 -13.221 1.352 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.353 5.353 11 C 0.290 3.710 12 O -0.415 6.415 13 C 0.013 3.987 14 H 0.097 0.903 15 C -0.185 4.185 16 C -0.158 4.158 17 C -0.196 4.196 18 C -0.019 4.019 19 O -0.272 6.272 20 H 0.078 0.922 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.230 0.770 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.526 -12.232 1.345 16.861 hybrid contribution -0.183 0.212 0.002 0.280 sum 11.344 -12.019 1.346 16.582 Atomic orbital electron populations 1.69878 1.06210 1.27453 1.49410 1.24787 0.94788 0.99173 0.93818 0.86822 0.80603 0.83206 0.79115 1.19798 1.20871 1.18464 1.21079 0.88426 0.95254 1.53405 0.90206 1.19515 0.95242 0.78380 0.96920 1.46089 1.05118 1.11156 1.72928 1.20060 0.83342 0.89738 0.77855 1.90669 1.55475 1.45835 1.49492 1.21953 0.83423 0.95104 0.98224 0.90252 1.22145 1.02147 0.96309 0.97859 1.21586 0.95311 0.96373 1.02507 1.22219 0.96866 1.01030 0.99476 1.22628 0.98830 0.84225 0.96178 1.88078 1.18118 1.26815 1.94191 0.92240 0.95596 0.96048 0.77014 0.90390 0.89872 0.91578 0.91105 0.90937 0.90911 0.93201 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.52 4.50 -5.19 -0.02 5.49 16 10 N -0.70 -14.47 5.51 -61.47 -0.34 -14.80 16 11 C 0.51 10.27 7.18 -10.98 -0.08 10.20 16 12 O -0.54 -13.32 16.51 -14.30 -0.24 -13.55 16 13 C 0.07 1.14 3.05 -27.83 -0.09 1.05 16 14 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.15 -1.83 5.37 -26.59 -0.14 -1.97 16 16 C -0.12 -1.15 6.03 -26.55 -0.16 -1.31 16 17 C -0.16 -1.48 6.14 -26.59 -0.16 -1.64 16 18 C 0.06 0.64 6.84 37.21 0.25 0.90 16 19 O -0.35 -5.72 9.94 -55.09 -0.55 -6.27 16 20 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 22 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 23 H 0.40 7.02 8.17 -40.82 -0.33 6.69 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.08 0.95 7.99 -51.93 -0.41 0.54 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 260.77 15.07 3.93 3.93 Total: -1.00 -33.02 260.77 -6.40 -39.42 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.48 Total: 0.49 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.83 Total: -0.42 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.43 Total: -40.49 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.78 Total: -19.82 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.02 -6.40 -39.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156753.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.691 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds