Wall clock time and date at job start Sun Mar 29 2020 22:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 H 1.09001 * 109.47400 * 54.97871 * 13 11 10 15 15 C 1.53096 * 109.47998 * 294.94770 * 13 11 10 16 16 C 1.53171 * 109.16050 * 182.40579 * 15 13 11 17 17 C 1.53176 * 109.03820 * 56.98214 * 16 15 13 18 18 C 1.53094 * 109.16188 * 303.01548 * 17 16 15 19 19 O 1.42899 * 109.48155 * 175.00210 * 13 11 10 20 20 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 22 22 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 23 23 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 24 24 H 1.09003 * 109.52061 * 302.31410 * 15 13 11 25 25 H 1.08998 * 109.52152 * 62.49942 * 15 13 11 26 26 H 1.09000 * 109.54489 * 297.10812 * 16 15 13 27 27 H 1.09000 * 109.53934 * 176.84695 * 16 15 13 28 28 H 1.09008 * 109.52011 * 183.11284 * 17 16 15 29 29 H 1.08997 * 109.57414 * 62.95349 * 17 16 15 30 30 H 1.09006 * 109.48079 * 297.62628 * 18 17 16 31 31 H 1.09001 * 109.49001 * 177.60124 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0071 12 8 6.1131 -1.8997 -0.0075 13 6 5.8273 -4.2424 -0.0133 14 1 5.3890 -4.7791 -0.8547 15 6 5.4288 -4.9305 1.2950 16 6 5.9943 -6.3540 1.3068 17 6 7.5136 -6.2896 1.1231 18 6 7.8315 -5.5490 -0.1785 19 8 7.2510 -4.2439 -0.1364 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8745 -0.6800 -0.8911 23 1 3.3695 -3.3126 -0.0010 24 1 5.8330 -4.3709 2.1386 25 1 4.3421 -4.9695 1.3697 26 1 5.5525 -6.9286 0.4927 27 1 5.7620 -6.8306 2.2591 28 1 7.9178 -7.3008 1.0749 29 1 7.9608 -5.7582 1.9631 30 1 7.4195 -6.1032 -1.0220 31 1 8.9120 -5.4628 -0.2933 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054156753.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:19 Heat of formation + Delta-G solvation = -122.095529 kcal Electronic energy + Delta-G solvation = -14278.686579 eV Core-core repulsion = 11751.527437 eV Total energy + Delta-G solvation = -2527.159142 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21392 -39.40217 -36.23628 -34.74212 -34.32748 -32.53100 -29.90685 -26.65108 -24.87150 -23.93970 -21.73193 -21.18484 -19.34849 -18.08170 -17.66729 -16.74018 -16.51868 -16.31062 -15.75147 -15.43567 -15.17907 -14.74941 -14.49341 -14.09662 -13.61154 -13.59198 -13.10090 -12.73361 -12.48478 -12.16493 -11.95140 -11.92863 -11.67232 -11.37453 -10.93080 -10.71746 -10.45291 -10.00379 -8.41124 -6.48090 1.31804 1.34394 1.46947 1.59331 2.00573 2.27409 2.94196 3.13280 3.66553 3.78235 3.91658 4.04711 4.07528 4.21520 4.50717 4.64721 4.76005 4.82003 4.88085 4.99012 5.04808 5.09422 5.17325 5.23074 5.38031 5.44134 6.03221 6.19743 6.52009 6.77665 7.13658 7.33173 8.73384 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061173 B = 0.006618 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.606149 B = 4229.882415 C = 4544.318883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.231 3.769 10 N -0.697 5.697 11 C 0.502 3.498 12 O -0.588 6.588 13 C 0.084 3.916 14 H 0.109 0.891 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.155 4.155 18 C 0.049 3.951 19 O -0.392 6.392 20 H 0.273 0.727 21 H 0.012 0.988 22 H 0.011 0.989 23 H 0.411 0.589 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.833 -14.758 1.294 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.108 3.892 10 N -0.349 5.349 11 C 0.289 3.711 12 O -0.468 6.468 13 C 0.023 3.977 14 H 0.126 0.874 15 C -0.183 4.183 16 C -0.153 4.153 17 C -0.193 4.193 18 C -0.027 4.027 19 O -0.311 6.311 20 H 0.082 0.918 21 H 0.030 0.970 22 H 0.029 0.971 23 H 0.247 0.753 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.320 -13.817 1.287 18.557 hybrid contribution -0.413 0.618 0.012 0.743 sum 11.907 -13.199 1.299 17.823 Atomic orbital electron populations 1.69967 1.07573 1.28638 1.50559 1.25548 0.95513 1.02499 0.93559 0.85907 0.79218 0.79589 0.79490 1.18965 1.19619 1.18779 1.21253 0.89609 0.94766 1.52757 0.91839 1.19136 0.93616 0.80734 0.95729 1.45898 1.06043 1.09979 1.72934 1.21049 0.82401 0.91796 0.75893 1.90635 1.56549 1.48039 1.51600 1.21891 0.83692 0.91314 1.00818 0.87399 1.22166 1.02822 0.97874 0.95400 1.21613 0.95258 0.94222 1.04192 1.22215 0.96848 1.02196 0.98003 1.22956 0.99350 0.82489 0.97874 1.88023 1.18304 1.30217 1.94596 0.91775 0.96977 0.97078 0.75270 0.92352 0.88936 0.89689 0.89521 0.87984 0.92135 0.91274 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.96 21.45 0.30 -54.96 16 2 C 0.03 1.67 5.47 84.66 0.46 2.13 16 3 Si 0.93 44.44 27.47 68.60 1.88 46.32 16 4 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -12.57 6.54 99.48 0.65 -11.92 16 7 C -0.55 -30.15 9.83 25.60 0.25 -29.90 16 8 H 0.06 3.63 7.84 -2.91 -0.02 3.61 16 9 C 0.23 11.59 4.50 85.63 0.38 11.98 16 10 N -0.70 -28.53 5.51 -466.79 -2.57 -31.11 16 11 C 0.50 20.26 7.18 87.66 0.63 20.89 16 12 O -0.59 -29.57 16.51 15.95 0.26 -29.30 16 13 C 0.08 2.42 3.05 29.88 0.09 2.51 16 14 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 15 C -0.14 -3.32 5.37 30.68 0.16 -3.15 16 16 C -0.12 -1.79 6.03 30.71 0.19 -1.61 16 17 C -0.16 -2.40 6.14 30.68 0.19 -2.21 16 18 C 0.05 0.95 6.84 72.01 0.49 1.44 16 19 O -0.39 -12.18 9.94 -129.99 -1.29 -13.47 16 20 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 21 H 0.01 0.65 7.20 -2.38 -0.02 0.63 16 22 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 23 H 0.41 14.24 8.17 -92.71 -0.76 13.48 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.09 1.92 7.99 -2.39 -0.02 1.90 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -71.63 260.77 1.74 -69.89 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.30 Total: 10.54 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 2.85 Total: 2.09 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.27 Total: -86.06 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -1.03 Total: -42.77 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -71.63 1.74 -69.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156753.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.205 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds