Wall clock time and date at job start Sun Mar 29 2020 22:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86794 * 120.00140 * 2 1 4 4 H 1.48497 * 109.47388 * 269.99979 * 3 2 1 5 5 H 1.48502 * 109.47228 * 30.00125 * 3 2 1 6 6 H 1.48509 * 109.47255 * 150.00284 * 3 2 1 7 7 C 1.38822 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99701 * 197.36028 * 7 2 1 9 9 N 1.36929 * 119.99806 * 17.35809 * 7 2 1 10 10 C 1.46927 * 120.63238 * 27.68173 * 9 7 2 11 11 C 1.53196 * 108.77552 * 126.38942 * 10 9 7 12 12 C 1.53040 * 109.31461 * 54.63433 * 11 10 9 13 13 C 1.53039 * 109.53867 * 298.63723 * 12 11 10 14 14 H 1.08999 * 109.49633 * 301.38071 * 13 12 11 15 15 C 1.53002 * 109.49745 * 181.31292 * 13 12 11 16 16 C 1.50699 * 109.46948 * 175.06251 * 15 13 12 17 17 O 1.20828 * 120.00300 * 0.02562 * 16 15 13 18 18 O 1.34227 * 119.99980 * 179.97438 * 16 15 13 19 19 C 1.46932 * 120.60428 * 207.65650 * 9 7 2 20 20 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.58896 * 6.60602 * 10 9 7 22 22 H 1.09000 * 109.70415 * 246.24690 * 10 9 7 23 23 H 1.09007 * 109.49630 * 294.68169 * 11 10 9 24 24 H 1.08999 * 109.49607 * 174.59163 * 11 10 9 25 25 H 1.08998 * 109.46267 * 178.61356 * 12 11 10 26 26 H 1.09000 * 109.45481 * 58.65838 * 12 11 10 27 27 H 1.08994 * 109.47241 * 295.06594 * 15 13 12 28 28 H 1.09003 * 109.46548 * 55.06442 * 15 13 12 29 29 H 0.96695 * 117.00147 * 179.97438 * 18 16 15 30 30 H 1.09003 * 109.55903 * 113.81352 * 19 9 7 31 31 H 1.08994 * 109.61600 * 353.38320 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3723 -2.3612 -0.3527 10 6 0.2278 -2.3350 -1.2737 11 6 0.5009 -3.3053 -2.4273 12 6 0.8190 -4.6903 -1.8593 13 6 2.0745 -4.6102 -0.9880 14 1 2.9085 -4.2407 -1.5847 15 6 2.4104 -6.0015 -0.4471 16 6 3.7122 -5.9452 0.3100 17 8 4.3098 -4.8996 0.4074 18 8 4.2073 -7.0565 0.8770 19 6 1.8201 -3.6545 0.1819 20 1 -0.4850 0.8401 0.0004 21 1 0.0984 -1.3267 -1.6673 22 1 -0.6758 -2.6400 -0.7459 23 1 1.3496 -2.9476 -3.0105 24 1 -0.3798 -3.3676 -3.0665 25 1 0.9895 -5.3885 -2.6787 26 1 -0.0202 -5.0368 -1.2561 27 1 1.6156 -6.3332 0.2210 28 1 2.5029 -6.7015 -1.2775 29 1 5.0454 -6.9711 1.3518 30 1 1.0479 -4.0683 0.8305 31 1 2.7410 -3.5171 0.7485 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054300071.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:37 Heat of formation + Delta-G solvation = -108.518609 kcal Electronic energy + Delta-G solvation = -14735.946549 eV Core-core repulsion = 12209.376147 eV Total energy + Delta-G solvation = -2526.570402 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.30918 -39.18362 -37.01387 -35.43137 -33.05748 -32.25603 -28.60675 -27.20735 -23.88140 -23.70176 -21.72486 -20.54372 -18.88833 -18.64787 -17.36458 -17.01928 -16.71365 -15.84288 -15.42012 -15.04070 -14.61969 -14.34366 -13.97131 -13.36441 -13.25542 -13.03899 -12.91436 -12.57895 -12.45329 -12.20100 -11.95593 -11.79435 -11.64239 -11.51272 -11.19386 -10.90190 -10.54275 -8.67595 -7.88868 -5.33408 1.33899 1.42763 1.44056 1.53834 2.25914 2.49369 3.23695 3.63310 4.00096 4.05835 4.09055 4.43092 4.48672 4.61649 4.71724 4.80144 4.89164 4.99591 5.06564 5.15290 5.34202 5.40704 5.46021 5.56616 5.66867 5.74690 5.81675 6.38742 7.10743 7.15343 7.87989 8.37443 9.16732 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.009388 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.356055 B = 2981.719679 C = 3564.973477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.263 4.263 8 H 0.053 0.947 9 N -0.612 5.612 10 C 0.171 3.829 11 C -0.135 4.135 12 C -0.096 4.096 13 C -0.087 4.087 14 H 0.055 0.945 15 C -0.099 4.099 16 C 0.476 3.524 17 O -0.551 6.551 18 O -0.513 6.513 19 C 0.144 3.856 20 H 0.251 0.749 21 H 0.049 0.951 22 H -0.001 1.001 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.423 0.577 30 H 0.011 0.989 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -14.627 -2.846 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.393 4.393 8 H 0.071 0.929 9 N -0.335 5.335 10 C 0.046 3.954 11 C -0.174 4.174 12 C -0.133 4.133 13 C -0.107 4.107 14 H 0.073 0.927 15 C -0.136 4.136 16 C 0.321 3.679 17 O -0.442 6.442 18 O -0.326 6.326 19 C 0.018 3.982 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.017 0.983 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.284 0.716 30 H 0.029 0.971 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.320 -14.252 -3.000 14.938 hybrid contribution 0.913 1.435 0.639 1.817 sum 4.233 -12.817 -2.361 13.703 Atomic orbital electron populations 1.70183 1.06450 1.25838 1.55443 1.25760 0.96151 1.01335 1.01360 0.85285 0.77995 0.79589 0.77719 1.20932 1.21528 1.19912 1.19440 0.92595 0.86556 1.40721 0.92907 1.44308 1.35900 1.02083 1.51182 1.20671 0.87565 0.97947 0.89228 1.22040 1.00814 0.96542 0.97960 1.21415 0.96322 0.96488 0.99074 1.21370 0.98534 0.93343 0.97474 0.92681 1.21468 0.91493 0.99113 1.01546 1.24006 0.87596 0.80359 0.75984 1.90772 1.61483 1.33085 1.58825 1.84494 1.44106 1.38007 1.66041 1.21203 0.96643 0.86143 0.94173 0.94006 0.93257 0.98319 0.93694 0.90639 0.89139 0.91491 0.85844 0.84205 0.71592 0.97097 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 11.19 21.65 0.24 -57.16 16 2 C -0.05 -3.01 4.91 84.87 0.42 -2.59 16 3 Si 0.97 47.50 29.59 68.60 2.03 49.53 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.26 -15.76 9.58 84.04 0.81 -14.96 16 8 H 0.05 3.23 7.89 -2.91 -0.02 3.20 16 9 N -0.61 -33.10 3.00 -699.06 -2.09 -35.19 16 10 C 0.17 8.59 5.31 86.36 0.46 9.05 16 11 C -0.13 -5.04 6.08 30.67 0.19 -4.85 16 12 C -0.10 -2.83 5.17 30.62 0.16 -2.67 16 13 C -0.09 -2.91 1.98 -10.71 -0.02 -2.93 16 14 H 0.05 2.09 7.96 -2.39 -0.02 2.08 16 15 C -0.10 -2.28 5.29 29.85 0.16 -2.12 16 16 C 0.48 12.88 8.07 71.24 0.58 13.45 16 17 O -0.55 -20.57 14.75 21.96 0.32 -20.25 16 18 O -0.51 -9.91 13.42 -51.38 -0.69 -10.60 16 19 C 0.14 6.46 5.47 86.36 0.47 6.93 16 20 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 21 H 0.05 2.80 6.04 -2.38 -0.01 2.79 16 22 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 23 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 24 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.12 2.41 8.14 -2.39 -0.02 2.40 16 28 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.42 4.96 9.10 -74.06 -0.67 4.29 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 2.27 5.89 -2.39 -0.01 2.26 16 Total: -1.00 -74.80 255.45 3.47 -71.32 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 0.45 Total: 3.02 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 3.21 Total: -0.68 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -1.85 Total: -92.35 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.37 Total: -30.84 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -74.80 3.47 -71.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054300071.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.195 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds