Wall clock time and date at job start Sun Mar 29 2020 21:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49021 * 2 1 4 4 C 1.53049 * 109.49018 * 239.95137 * 2 1 3 5 5 N 1.46962 * 109.36340 * 181.62915 * 4 2 1 6 6 C 1.46961 * 110.87813 * 59.32214 * 5 4 2 7 7 C 1.53049 * 109.36494 * 300.67695 * 6 5 4 8 8 N 1.46961 * 109.48746 * 120.05998 * 2 1 3 9 9 C 1.46898 * 111.00019 * 303.15447 * 8 2 1 10 10 C 1.53003 * 109.46977 * 169.99875 * 9 8 2 11 11 C 1.52996 * 109.47213 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47271 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99967 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00169 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99943 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47036 * 89.99988 * 16 14 12 18 18 H 1.48504 * 109.46844 * 209.99858 * 16 14 12 19 19 H 1.48497 * 109.46802 * 330.00007 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.04834 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.04816 * 1 2 3 23 23 H 1.08990 * 109.49200 * 301.59777 * 4 2 1 24 24 H 1.09001 * 109.48758 * 61.66552 * 4 2 1 25 25 H 1.00893 * 111.00539 * 295.45599 * 5 4 2 26 26 H 1.09004 * 109.48667 * 60.64543 * 6 5 4 27 27 H 1.09000 * 109.48915 * 180.70892 * 6 5 4 28 28 H 1.09001 * 109.48758 * 178.36803 * 7 6 5 29 29 H 1.08992 * 109.48622 * 298.41295 * 7 6 5 30 30 H 1.09003 * 109.47321 * 289.99954 * 9 8 2 31 31 H 1.08996 * 109.47034 * 50.00631 * 9 8 2 32 32 H 1.09003 * 109.47159 * 300.00178 * 10 9 8 33 33 H 1.09009 * 109.46828 * 60.00456 * 10 9 8 34 34 H 1.09003 * 109.47669 * 300.00410 * 11 10 9 35 35 H 1.09007 * 109.47045 * 59.99967 * 11 10 9 36 36 H 0.96993 * 120.00025 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 3.5097 -0.7550 -1.2265 6 6 4.0000 -1.4490 -0.0274 7 6 3.4893 -0.7266 1.2215 8 7 2.0202 -0.6940 1.1991 9 6 1.4888 -0.0742 2.4203 10 6 1.8115 -0.9613 3.6244 11 6 1.2586 -0.3155 4.8964 12 6 1.5770 -1.1889 6.0824 13 1 2.1198 -2.1120 5.9430 14 6 1.1753 -0.8094 7.3457 15 7 0.5138 0.3145 7.5155 16 14 1.5706 -1.8918 8.8160 17 1 2.8836 -1.4945 9.3843 18 1 0.5150 -1.7297 9.8479 19 1 1.6272 -3.3115 8.3844 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5131 -0.8904 22 1 -0.3634 0.5146 0.8896 23 1 1.6545 -1.7416 -1.2629 24 1 1.7022 -0.1927 -2.1393 25 1 3.8931 0.1762 -1.2873 26 1 3.6360 -2.4765 -0.0276 27 1 5.0900 -1.4490 -0.0274 28 1 3.8278 -1.2563 2.1119 29 1 3.8759 0.2924 1.2356 30 1 1.9451 0.9061 2.5585 31 1 0.4083 0.0374 2.3305 32 1 1.3552 -1.9415 3.4862 33 1 2.8921 -1.0728 3.7142 34 1 1.7152 0.6646 5.0344 35 1 0.1780 -0.2034 4.8068 36 1 0.2315 0.5816 8.4041 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054373389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:09 Heat of formation + Delta-G solvation = -10.276324 kcal Electronic energy + Delta-G solvation = -14448.099894 eV Core-core repulsion = 12159.341354 eV Total energy + Delta-G solvation = -2288.758540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.41898 -35.18835 -33.39719 -32.48473 -30.87461 -27.59170 -26.49675 -24.66541 -22.43145 -21.92400 -20.09183 -19.83958 -16.45655 -15.98724 -15.52884 -14.94440 -14.67238 -14.48754 -14.03934 -13.88643 -12.89434 -12.46438 -12.30366 -12.02086 -11.84373 -11.65626 -11.34450 -11.19711 -11.05191 -10.97649 -10.78349 -10.51913 -10.31962 -9.57227 -9.34199 -9.07314 -8.48569 -8.33256 -8.04531 -5.98892 -4.00968 3.32674 3.38723 3.42681 3.98066 4.24980 4.47594 4.88715 5.07470 5.15462 5.19119 5.27688 5.36904 5.48655 5.53072 5.71455 5.80578 5.83940 5.86554 5.99265 6.04214 6.10329 6.25181 6.39073 6.69902 6.78404 6.86070 7.12360 7.25454 7.36647 7.39022 7.69114 7.83959 8.01472 8.45004 9.06217 9.63016 11.12626 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053558 B = 0.005852 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.669266 B = 4783.700037 C = 5129.722661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 H 0.033 0.967 4 C 0.065 3.935 5 N -0.689 5.689 6 C 0.059 3.941 7 C 0.015 3.985 8 N -0.530 5.530 9 C 0.051 3.949 10 C -0.103 4.103 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.065 0.935 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.335 0.665 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.027 0.973 30 H 0.025 0.975 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.012 0.988 35 H 0.015 0.985 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -0.331 -15.687 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 H 0.051 0.949 4 C -0.065 4.065 5 N -0.316 5.316 6 C -0.071 4.071 7 C -0.115 4.115 8 N -0.255 5.255 9 C -0.076 4.076 10 C -0.141 4.141 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.152 0.848 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.204 -1.283 -16.000 16.368 hybrid contribution 0.264 1.119 1.772 2.112 sum 3.468 -0.164 -14.228 14.646 Atomic orbital electron populations 1.21852 0.93988 1.02793 1.01721 1.22363 0.96559 0.95479 0.92450 0.94916 1.22152 0.87364 1.01535 0.95437 1.60800 1.07853 1.23040 1.39909 1.22120 0.99261 0.98986 0.86735 1.22874 0.88617 0.99272 1.00736 1.62234 1.07493 1.53738 1.02047 1.22401 1.00010 0.95994 0.89181 1.21639 1.00010 0.98615 0.93841 1.19070 0.96172 0.95794 0.90522 1.21250 1.35703 1.06741 0.91946 0.92690 1.25032 0.95214 0.95217 0.99046 1.69967 1.38865 1.22327 1.22500 0.86593 0.77969 0.80984 0.82467 1.20703 1.21221 1.19836 0.91598 0.92506 0.91946 0.90051 0.90708 0.84835 0.90018 0.90526 0.89339 0.95467 0.95700 0.90590 0.92622 0.93614 0.96945 0.96643 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.89 37.16 0.33 -1.42 16 2 C 0.04 0.54 2.56 -67.66 -0.17 0.36 16 3 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.07 0.73 6.00 -3.77 -0.02 0.71 16 5 N -0.69 -7.74 6.91 -113.63 -0.79 -8.52 16 6 C 0.06 0.69 6.72 -3.77 -0.03 0.67 16 7 C 0.01 0.21 5.40 -3.77 -0.02 0.19 16 8 N -0.53 -8.14 4.53 -226.49 -1.03 -9.17 16 9 C 0.05 0.92 4.73 -3.82 -0.02 0.90 16 10 C -0.10 -2.20 5.09 -26.73 -0.14 -2.33 16 11 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.82 6.15 -51.93 -0.32 0.50 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.34 3.40 8.89 -39.30 -0.35 3.05 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.34 6.34 -51.93 -0.33 1.01 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.08 1.36 5.73 -51.93 -0.30 1.06 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.96 6.49 -51.92 -0.34 0.62 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 281.85 15.07 4.25 4.25 Total: -1.00 -30.23 281.85 -8.71 -38.93 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.25 Total: -1.58 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.61 Total: -14.23 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -1.07 Total: -44.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.23 -8.71 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054373389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.658 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds