Wall clock time and date at job start Sun Mar 29 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49021 * 2 1 4 4 C 1.53049 * 109.49018 * 239.95137 * 2 1 3 5 5 N 1.46962 * 109.36340 * 181.62915 * 4 2 1 6 6 C 1.46961 * 110.87813 * 59.32214 * 5 4 2 7 7 C 1.53049 * 109.36494 * 300.67695 * 6 5 4 8 8 N 1.46961 * 109.48746 * 120.05998 * 2 1 3 9 9 C 1.46898 * 111.00019 * 303.15447 * 8 2 1 10 10 C 1.53003 * 109.46977 * 169.99875 * 9 8 2 11 11 C 1.52996 * 109.47213 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47271 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99967 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00169 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99943 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47036 * 89.99988 * 16 14 12 18 18 H 1.48504 * 109.46844 * 209.99858 * 16 14 12 19 19 H 1.48497 * 109.46802 * 330.00007 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.04834 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.04816 * 1 2 3 23 23 H 1.08990 * 109.49200 * 301.59777 * 4 2 1 24 24 H 1.09001 * 109.48758 * 61.66552 * 4 2 1 25 25 H 1.00893 * 111.00539 * 295.45599 * 5 4 2 26 26 H 1.09004 * 109.48667 * 60.64543 * 6 5 4 27 27 H 1.09000 * 109.48915 * 180.70892 * 6 5 4 28 28 H 1.09001 * 109.48758 * 178.36803 * 7 6 5 29 29 H 1.08992 * 109.48622 * 298.41295 * 7 6 5 30 30 H 1.09003 * 109.47321 * 289.99954 * 9 8 2 31 31 H 1.08996 * 109.47034 * 50.00631 * 9 8 2 32 32 H 1.09003 * 109.47159 * 300.00178 * 10 9 8 33 33 H 1.09009 * 109.46828 * 60.00456 * 10 9 8 34 34 H 1.09003 * 109.47669 * 300.00410 * 11 10 9 35 35 H 1.09007 * 109.47045 * 59.99967 * 11 10 9 36 36 H 0.96993 * 120.00025 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 3.5097 -0.7550 -1.2265 6 6 4.0000 -1.4490 -0.0274 7 6 3.4893 -0.7266 1.2215 8 7 2.0202 -0.6940 1.1991 9 6 1.4888 -0.0742 2.4203 10 6 1.8115 -0.9613 3.6244 11 6 1.2586 -0.3155 4.8964 12 6 1.5770 -1.1889 6.0824 13 1 2.1198 -2.1120 5.9430 14 6 1.1753 -0.8094 7.3457 15 7 0.5138 0.3145 7.5155 16 14 1.5706 -1.8918 8.8160 17 1 2.8836 -1.4945 9.3843 18 1 0.5150 -1.7297 9.8479 19 1 1.6272 -3.3115 8.3844 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5131 -0.8904 22 1 -0.3634 0.5146 0.8896 23 1 1.6545 -1.7416 -1.2629 24 1 1.7022 -0.1927 -2.1393 25 1 3.8931 0.1762 -1.2873 26 1 3.6360 -2.4765 -0.0276 27 1 5.0900 -1.4490 -0.0274 28 1 3.8278 -1.2563 2.1119 29 1 3.8759 0.2924 1.2356 30 1 1.9451 0.9061 2.5585 31 1 0.4083 0.0374 2.3305 32 1 1.3552 -1.9415 3.4862 33 1 2.8921 -1.0728 3.7142 34 1 1.7152 0.6646 5.0344 35 1 0.1780 -0.2034 4.8068 36 1 0.2315 0.5816 8.4041 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054373389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:08 Heat of formation + Delta-G solvation = -31.962333 kcal Electronic energy + Delta-G solvation = -14449.040270 eV Core-core repulsion = 12159.341354 eV Total energy + Delta-G solvation = -2289.698916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52771 -36.66729 -35.13591 -33.77057 -32.56987 -28.99442 -27.88547 -26.11483 -24.07285 -22.99523 -21.70700 -21.07498 -18.52254 -17.20906 -16.74802 -16.48780 -16.01951 -15.87801 -15.35424 -15.19785 -14.42126 -13.99658 -13.73892 -13.56706 -13.03845 -12.96508 -12.78588 -12.70472 -12.43766 -12.39784 -12.16796 -12.02889 -11.83489 -11.42570 -11.31490 -11.11638 -10.57539 -9.53343 -9.20625 -8.22426 -6.33921 1.38670 1.40318 1.51796 2.39239 2.81290 3.10596 3.34318 3.86752 3.97052 4.07937 4.14641 4.24194 4.28422 4.46025 4.57664 4.60397 4.65034 4.76934 4.81730 4.90691 4.94202 5.04298 5.10411 5.15152 5.19552 5.34759 5.48764 5.69417 5.82153 5.92194 6.01430 6.19063 6.24633 6.43706 6.82511 7.35551 8.89645 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053558 B = 0.005852 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.669266 B = 4783.700037 C = 5129.722661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.040 3.960 3 H 0.032 0.968 4 C 0.071 3.929 5 N -0.687 5.687 6 C 0.067 3.933 7 C 0.013 3.987 8 N -0.537 5.537 9 C 0.064 3.936 10 C -0.087 4.087 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.263 1.263 20 H 0.061 0.939 21 H 0.083 0.917 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.344 0.656 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.016 0.984 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.048 0.952 34 H -0.012 1.012 35 H -0.009 1.009 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -1.107 -16.636 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 H 0.050 0.950 4 C -0.059 4.059 5 N -0.315 5.315 6 C -0.063 4.063 7 C -0.116 4.116 8 N -0.262 5.262 9 C -0.064 4.064 10 C -0.124 4.124 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.188 1.188 20 H 0.080 0.920 21 H 0.101 0.899 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.161 0.839 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.006 0.994 35 H 0.010 0.990 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.913 -2.059 -16.976 17.542 hybrid contribution 0.036 1.400 2.030 2.466 sum 3.949 -0.659 -14.946 15.473 Atomic orbital electron populations 1.21841 0.93397 1.02665 1.02207 1.22499 0.97098 0.95404 0.91928 0.95032 1.22156 0.87274 1.01212 0.95241 1.60802 1.07866 1.23654 1.39143 1.22070 1.00317 0.98214 0.85669 1.22938 0.87782 0.99390 1.01529 1.62203 1.08419 1.53826 1.01757 1.22105 1.00062 0.94793 0.89449 1.21369 0.99633 0.98402 0.93046 1.18960 0.94592 0.94787 0.92744 1.21673 1.36061 1.07264 0.93178 0.92322 1.26005 0.94763 0.96648 1.02413 1.70098 1.39710 1.24103 1.23525 0.85421 0.78070 0.79196 0.78215 1.19663 1.20562 1.18754 0.91998 0.89853 0.93632 0.90701 0.88304 0.83859 0.90708 0.88598 0.90807 0.95541 0.96585 0.90721 0.93067 0.93381 0.99398 0.99016 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.89 71.98 0.64 -2.60 16 2 C 0.04 0.98 2.56 44.92 0.11 1.09 16 3 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 4 C 0.07 1.42 6.00 86.31 0.52 1.93 16 5 N -0.69 -13.65 6.91 -513.42 -3.55 -17.20 16 6 C 0.07 1.46 6.72 86.31 0.58 2.04 16 7 C 0.01 0.36 5.40 86.31 0.47 0.83 16 8 N -0.54 -16.13 4.53 -870.48 -3.94 -20.07 16 9 C 0.06 2.32 4.73 86.30 0.41 2.72 16 10 C -0.09 -3.76 5.09 30.59 0.16 -3.61 16 11 C 0.03 1.46 4.97 29.85 0.15 1.61 16 12 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 15 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 16 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.04 1.18 6.15 -2.38 -0.01 1.16 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.34 6.01 8.89 -89.70 -0.80 5.22 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.21 6.34 -2.39 -0.02 2.19 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.07 2.73 5.73 -2.39 -0.01 2.72 16 32 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 2.04 6.49 -2.38 -0.02 2.03 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.72 281.85 -1.21 -65.93 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.24 Total: 9.13 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 3.73 Total: -27.20 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -7.20 Total: -94.81 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.72 -1.21 -65.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054373389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.968 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds