Wall clock time and date at job start Sun Mar 29 2020 21:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99631 * 2 1 4 4 H 1.48506 * 109.46642 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47012 * 29.99527 * 3 2 1 6 6 H 1.48495 * 109.47152 * 149.99773 * 3 2 1 7 7 C 1.37875 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99354 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00355 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99789 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47426 * 324.99890 * 12 11 10 14 14 C 1.50708 * 109.46830 * 204.99737 * 12 11 10 15 15 O 1.20821 * 119.99754 * 0.02562 * 14 12 11 16 16 O 1.34229 * 119.99683 * 180.02562 * 14 12 11 17 17 C 1.52999 * 109.47235 * 85.00200 * 12 11 10 18 18 C 1.53003 * 117.49736 * 248.74584 * 17 12 11 19 19 C 1.52993 * 117.50134 * 180.08565 * 17 12 11 20 20 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47328 * 60.00043 * 9 7 2 22 22 H 1.09004 * 109.47043 * 299.99853 * 9 7 2 23 23 H 1.08992 * 109.47056 * 59.99641 * 10 9 7 24 24 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 25 25 H 1.00899 * 110.99484 * 303.95475 * 11 10 9 26 26 H 0.96704 * 116.99694 * 180.02562 * 16 14 12 27 27 H 1.09006 * 115.54981 * 34.41090 * 17 12 11 28 28 H 1.09000 * 117.49956 * 359.97438 * 18 17 12 29 29 H 1.08996 * 117.50035 * 145.01800 * 18 17 12 30 30 H 1.09004 * 117.50097 * 214.97969 * 19 17 12 31 31 H 1.09000 * 117.49724 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 7 5.4908 -2.6362 0.0009 12 6 6.0172 -4.0076 0.0014 13 1 5.3616 -4.6483 0.5912 14 6 7.3995 -4.0147 0.6018 15 8 7.8949 -2.9833 0.9899 16 8 8.0802 -5.1670 0.7054 17 6 6.0827 -4.5293 -1.4354 18 6 5.1161 -5.6496 -1.8248 19 6 6.6063 -5.9511 -1.6476 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.6798 0.8911 22 1 3.8753 -0.6802 -0.8889 23 1 3.6587 -3.1499 -0.8891 24 1 3.6581 -3.1504 0.8908 25 1 5.8522 -2.1100 -0.7804 26 1 8.9630 -5.1216 1.0976 27 1 6.3235 -3.7856 -2.1951 28 1 4.4339 -6.0152 -1.0573 29 1 4.7214 -5.6432 -2.8408 30 1 7.1914 -6.1430 -2.5470 31 1 6.9047 -6.5147 -0.7636 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054523479.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:34 Heat of formation + Delta-G solvation = -70.530321 kcal Electronic energy + Delta-G solvation = -14087.089097 eV Core-core repulsion = 11562.165991 eV Total energy + Delta-G solvation = -2524.923106 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30570 -37.80362 -36.12430 -35.06932 -32.78374 -30.39831 -27.13178 -23.71403 -22.56769 -22.17277 -20.67498 -20.27054 -17.98913 -16.80894 -16.46310 -16.06075 -15.42394 -14.78158 -14.25569 -13.78045 -13.50239 -13.36235 -12.62767 -12.32747 -11.85143 -11.62137 -11.48176 -11.26897 -11.05413 -10.80831 -10.60401 -10.12161 -10.09771 -9.84908 -9.71024 -9.23964 -8.53575 -8.07927 -6.04546 -4.03253 2.34637 2.95856 3.33454 3.41269 3.48631 3.73665 4.47238 4.52561 4.56194 4.82695 4.92422 5.11984 5.30296 5.43344 5.44161 5.63577 5.81021 6.01042 6.08565 6.09938 6.21415 6.55770 6.71384 7.01606 7.33083 7.48937 7.65256 7.83041 8.05625 8.51703 8.98871 9.57855 11.08557 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040952 B = 0.006857 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.563102 B = 4082.467702 C = 4542.085329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.077 3.923 11 N -0.672 5.672 12 C 0.131 3.869 13 H 0.114 0.886 14 C 0.483 3.517 15 O -0.495 6.495 16 O -0.520 6.520 17 C -0.189 4.189 18 C -0.167 4.167 19 C -0.167 4.167 20 H 0.263 0.737 21 H 0.027 0.973 22 H 0.010 0.990 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.346 0.654 26 H 0.403 0.597 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.328 -11.541 -2.476 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.051 4.051 11 N -0.303 5.303 12 C 0.018 3.982 13 H 0.131 0.869 14 C 0.323 3.677 15 O -0.381 6.381 16 O -0.332 6.332 17 C -0.209 4.209 18 C -0.204 4.204 19 C -0.205 4.205 20 H 0.073 0.927 21 H 0.045 0.955 22 H 0.029 0.971 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.165 0.835 26 H 0.261 0.739 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.948 -11.048 -1.837 17.888 hybrid contribution 0.722 0.746 -0.704 1.255 sum 14.670 -10.302 -2.541 18.105 Atomic orbital electron populations 1.69909 1.06315 1.26960 1.51049 1.24990 0.94721 0.99203 0.94412 0.86772 0.80600 0.83448 0.78501 1.20381 1.21398 1.18654 1.21030 0.89207 0.94557 1.51186 0.91024 1.19556 0.96722 0.91550 0.96999 1.22043 0.82438 1.00609 0.99966 1.60272 1.10484 1.08985 1.50537 1.20656 0.90118 0.93728 0.93649 0.86861 1.23560 0.87968 0.80617 0.75581 1.90708 1.68871 1.33876 1.44608 1.84566 1.34132 1.37466 1.77005 1.23041 1.07517 0.93179 0.97168 1.23064 0.92930 1.01314 1.03087 1.23026 0.96519 0.97292 1.03653 0.92701 0.95475 0.97128 0.95051 0.91514 0.83503 0.73899 0.87236 0.88329 0.88500 0.88972 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 10 C 0.08 1.51 5.42 -3.82 -0.02 1.49 16 11 N -0.67 -11.58 5.74 -107.95 -0.62 -12.20 16 12 C 0.13 1.82 2.73 -68.86 -0.19 1.63 16 13 H 0.11 1.51 7.56 -51.93 -0.39 1.12 16 14 C 0.48 6.69 7.68 36.01 0.28 6.97 16 15 O -0.50 -8.70 17.19 -18.75 -0.32 -9.02 16 16 O -0.52 -5.15 11.36 -39.25 -0.45 -5.60 16 17 C -0.19 -2.23 5.06 -90.62 -0.46 -2.69 16 18 C -0.17 -1.79 10.18 -26.69 -0.27 -2.06 16 19 C -0.17 -1.63 9.45 -26.70 -0.25 -1.88 16 20 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 21 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 22 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 23 H 0.03 0.60 8.01 -51.93 -0.42 0.18 16 24 H 0.07 1.32 8.06 -51.93 -0.42 0.91 16 25 H 0.35 5.75 8.34 -39.29 -0.33 5.42 16 26 H 0.40 2.36 9.10 45.56 0.41 2.77 16 27 H 0.11 1.30 7.93 -51.93 -0.41 0.89 16 28 H 0.10 1.05 8.05 -51.93 -0.42 0.63 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.02 6.85 -51.93 -0.36 0.67 16 LS Contribution 267.67 15.07 4.03 4.03 Total: -1.00 -33.06 267.67 -6.24 -39.30 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -3.52 Total: 3.46 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.47 Total: -10.20 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.15 Total: -39.37 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.77 Total: -14.62 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.06 -6.24 -39.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054523479.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.232 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds