Wall clock time and date at job start Sun Mar 29 2020 21:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86811 * 119.99631 * 2 1 4 4 H 1.48506 * 109.46642 * 269.99835 * 3 2 1 5 5 H 1.48502 * 109.47012 * 29.99527 * 3 2 1 6 6 H 1.48495 * 109.47152 * 149.99773 * 3 2 1 7 7 C 1.37875 * 120.00777 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99354 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00355 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.46895 * 110.99789 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47426 * 324.99890 * 12 11 10 14 14 C 1.50708 * 109.46830 * 204.99737 * 12 11 10 15 15 O 1.20821 * 119.99754 * 0.02562 * 14 12 11 16 16 O 1.34229 * 119.99683 * 180.02562 * 14 12 11 17 17 C 1.52999 * 109.47235 * 85.00200 * 12 11 10 18 18 C 1.53003 * 117.49736 * 248.74584 * 17 12 11 19 19 C 1.52993 * 117.50134 * 180.08565 * 17 12 11 20 20 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47328 * 60.00043 * 9 7 2 22 22 H 1.09004 * 109.47043 * 299.99853 * 9 7 2 23 23 H 1.08992 * 109.47056 * 59.99641 * 10 9 7 24 24 H 1.09004 * 109.47006 * 299.99757 * 10 9 7 25 25 H 1.00899 * 110.99484 * 303.95475 * 11 10 9 26 26 H 0.96704 * 116.99694 * 180.02562 * 16 14 12 27 27 H 1.09006 * 115.54981 * 34.41090 * 17 12 11 28 28 H 1.09000 * 117.49956 * 359.97438 * 18 17 12 29 29 H 1.08996 * 117.50035 * 145.01800 * 18 17 12 30 30 H 1.09004 * 117.50097 * 214.97969 * 19 17 12 31 31 H 1.09000 * 117.49724 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 7 5.4908 -2.6362 0.0009 12 6 6.0172 -4.0076 0.0014 13 1 5.3616 -4.6483 0.5912 14 6 7.3995 -4.0147 0.6018 15 8 7.8949 -2.9833 0.9899 16 8 8.0802 -5.1670 0.7054 17 6 6.0827 -4.5293 -1.4354 18 6 5.1161 -5.6496 -1.8248 19 6 6.6063 -5.9511 -1.6476 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.6798 0.8911 22 1 3.8753 -0.6802 -0.8889 23 1 3.6587 -3.1499 -0.8891 24 1 3.6581 -3.1504 0.8908 25 1 5.8522 -2.1100 -0.7804 26 1 8.9630 -5.1216 1.0976 27 1 6.3235 -3.7856 -2.1951 28 1 4.4339 -6.0152 -1.0573 29 1 4.7214 -5.6432 -2.8408 30 1 7.1914 -6.1430 -2.5470 31 1 6.9047 -6.5147 -0.7636 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054523479.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:34 Heat of formation + Delta-G solvation = -94.955197 kcal Electronic energy + Delta-G solvation = -14088.148239 eV Core-core repulsion = 11562.165991 eV Total energy + Delta-G solvation = -2525.982249 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.36847 -38.83346 -37.17305 -36.45017 -34.78152 -32.15984 -28.62376 -25.46864 -23.45788 -23.09225 -22.34373 -21.42299 -19.11871 -18.85395 -17.64183 -17.08207 -16.61536 -16.14357 -15.99558 -15.03756 -14.88649 -14.78084 -14.51232 -13.60179 -13.44842 -12.94326 -12.75255 -12.46649 -12.27974 -12.07407 -11.87940 -11.85920 -11.70944 -11.45260 -11.34901 -10.87567 -10.76534 -9.41952 -8.29832 -6.33778 1.27501 1.35822 1.38976 1.51981 1.97237 2.36597 2.83372 3.05980 3.39877 3.59475 3.93956 4.01224 4.13401 4.41729 4.47094 4.50682 4.59524 4.85093 4.94777 5.00966 5.16452 5.26573 5.32609 5.46407 5.62434 5.68123 5.97550 6.22027 6.36644 6.74044 7.11932 7.31221 8.86465 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040952 B = 0.006857 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.563102 B = 4082.467702 C = 4542.085329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.007 4.007 10 C 0.094 3.906 11 N -0.682 5.682 12 C 0.129 3.871 13 H 0.119 0.881 14 C 0.493 3.507 15 O -0.538 6.538 16 O -0.503 6.503 17 C -0.202 4.202 18 C -0.171 4.171 19 C -0.146 4.146 20 H 0.267 0.733 21 H 0.018 0.982 22 H 0.019 0.981 23 H 0.035 0.965 24 H 0.061 0.939 25 H 0.349 0.651 26 H 0.425 0.575 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.261 -12.014 -2.934 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.045 4.045 10 C -0.034 4.034 11 N -0.313 5.313 12 C 0.017 3.983 13 H 0.136 0.864 14 C 0.335 3.665 15 O -0.427 6.427 16 O -0.316 6.316 17 C -0.222 4.222 18 C -0.208 4.208 19 C -0.183 4.183 20 H 0.076 0.924 21 H 0.036 0.964 22 H 0.037 0.963 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.168 0.832 26 H 0.286 0.714 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.916 -11.569 -2.299 19.810 hybrid contribution 0.125 0.744 -0.551 0.935 sum 16.042 -10.824 -2.850 19.561 Atomic orbital electron populations 1.70047 1.08137 1.28168 1.52577 1.25922 0.95559 1.03286 0.94112 0.85686 0.79366 0.78560 0.79201 1.19011 1.20940 1.17672 1.21364 0.91622 0.93382 1.50480 0.94330 1.19450 0.93788 0.94510 0.96718 1.21662 0.84247 0.97619 0.99911 1.60112 1.08666 1.11485 1.51067 1.20670 0.90376 0.91926 0.95303 0.86367 1.23404 0.87847 0.80726 0.74503 1.90703 1.69881 1.35481 1.46602 1.84495 1.35425 1.35192 1.76530 1.22917 1.09501 0.94201 0.95606 1.23142 0.93664 1.00665 1.03360 1.23092 0.95780 0.95015 1.04451 0.92435 0.96378 0.96301 0.94667 0.92080 0.83169 0.71389 0.87349 0.88475 0.87974 0.87406 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 2 C 0.01 0.49 5.47 84.65 0.46 0.96 16 3 Si 0.95 45.31 27.47 68.60 1.88 47.19 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.25 -11.62 6.54 99.48 0.65 -10.97 16 7 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 9 C -0.01 -0.32 4.30 29.85 0.13 -0.20 16 10 C 0.09 3.64 5.42 86.30 0.47 4.11 16 11 N -0.68 -22.78 5.74 -495.43 -2.84 -25.63 16 12 C 0.13 3.38 2.73 44.17 0.12 3.50 16 13 H 0.12 2.97 7.56 -2.39 -0.02 2.95 16 14 C 0.49 12.73 7.68 71.24 0.55 13.28 16 15 O -0.54 -18.22 17.19 21.98 0.38 -17.84 16 16 O -0.50 -8.47 11.36 -51.41 -0.58 -9.05 16 17 C -0.20 -4.36 5.06 -10.80 -0.05 -4.42 16 18 C -0.17 -3.31 10.18 30.62 0.31 -3.00 16 19 C -0.15 -2.40 9.45 30.62 0.29 -2.12 16 20 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 21 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 22 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 23 H 0.04 1.33 8.01 -2.39 -0.02 1.31 16 24 H 0.06 2.42 8.06 -2.38 -0.02 2.40 16 25 H 0.35 11.20 8.34 -89.69 -0.75 10.45 16 26 H 0.42 3.60 9.10 -74.05 -0.67 2.92 16 27 H 0.11 2.38 7.93 -2.38 -0.02 2.36 16 28 H 0.10 1.90 8.05 -2.39 -0.02 1.88 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.11 1.76 6.85 -2.39 -0.02 1.74 16 Total: -1.00 -70.90 267.67 1.32 -69.58 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -0.34 Total: 13.40 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 2.52 Total: -18.28 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.54 Total: -85.00 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.21 Total: -26.90 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -70.90 1.32 -69.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054523479.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.371 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds