Wall clock time and date at job start Sun Mar 29 2020 21:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47088 * 270.00111 * 3 2 1 5 5 H 1.48503 * 109.46868 * 29.99978 * 3 2 1 6 6 H 1.48495 * 109.47347 * 149.99998 * 3 2 1 7 7 C 1.37885 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47226 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.46993 * 179.97438 * 10 9 7 12 12 C 1.46900 * 110.99894 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47389 * 324.99770 * 12 11 10 14 14 C 1.50697 * 109.47288 * 84.99960 * 12 11 10 15 15 O 1.20825 * 119.99647 * 0.02562 * 14 12 11 16 16 O 1.34232 * 120.00255 * 179.97438 * 14 12 11 17 17 C 1.53003 * 109.47204 * 205.00143 * 12 11 10 18 18 C 1.53001 * 117.51964 * 111.28382 * 17 12 11 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 12 20 20 H 0.97000 * 119.99773 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46958 * 59.99615 * 9 7 2 22 22 H 1.09005 * 109.46787 * 300.00511 * 9 7 2 23 23 H 1.08997 * 109.47333 * 59.99437 * 10 9 7 24 24 H 1.08998 * 109.46692 * 299.99738 * 10 9 7 25 25 H 1.00893 * 111.00203 * 303.94792 * 11 10 9 26 26 H 0.96703 * 117.00052 * 179.97438 * 16 14 12 27 27 H 1.09002 * 115.54973 * 325.58166 * 17 12 11 28 28 H 1.09001 * 117.49733 * 214.97413 * 18 17 12 29 29 H 1.08995 * 117.49577 * 359.97438 * 18 17 12 30 30 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 31 31 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4351 -6.0759 -0.0005 13 1 3.3176 -5.8286 -0.5907 14 6 2.8485 -6.3883 1.4146 15 8 2.4169 -5.7279 2.3297 16 8 3.6954 -7.4008 1.6584 17 6 1.7396 -7.2950 -0.6096 18 6 2.2406 -7.7894 -1.9681 19 6 2.5432 -8.5938 -0.7023 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6044 0.8894 24 1 2.8718 -3.6043 -0.8905 25 1 0.8746 -4.9842 0.7817 26 1 3.9318 -7.5627 2.5821 27 1 0.6718 -7.3773 -0.4067 28 1 1.5024 -8.1968 -2.6589 29 1 3.0656 -7.2458 -2.4284 30 1 3.5674 -8.5795 -0.3296 31 1 2.0039 -9.5304 -0.5603 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054523480.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:36 Heat of formation + Delta-G solvation = -76.522715 kcal Electronic energy + Delta-G solvation = -14065.398322 eV Core-core repulsion = 11540.215365 eV Total energy + Delta-G solvation = -2525.182956 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.42426 -37.49535 -36.33022 -34.96709 -32.81860 -29.95363 -26.75203 -23.85799 -22.52302 -22.16071 -20.72788 -20.01737 -18.08968 -16.86108 -16.35683 -15.87152 -15.46428 -14.54918 -14.26481 -13.98102 -13.54644 -12.96774 -12.50565 -12.12629 -11.61084 -11.57295 -11.24806 -11.13396 -10.94632 -10.86716 -10.59778 -10.34084 -10.14390 -9.90483 -9.37942 -9.14511 -8.35424 -8.11019 -5.97737 -4.00265 2.26905 3.07386 3.33930 3.39742 3.43269 3.84750 4.36985 4.52306 4.76098 4.93092 5.09712 5.20788 5.38377 5.47213 5.51512 5.68937 5.89337 6.13501 6.20142 6.24276 6.36284 6.54025 6.93992 7.27093 7.66992 7.74350 7.89105 7.97284 8.06762 8.43754 9.06289 9.63161 11.13834 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046666 B = 0.006169 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.865021 B = 4537.581262 C = 4803.657496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.060 3.940 11 N -0.656 5.656 12 C 0.127 3.873 13 H 0.112 0.888 14 C 0.450 3.550 15 O -0.511 6.511 16 O -0.517 6.517 17 C -0.139 4.139 18 C -0.166 4.166 19 C -0.176 4.176 20 H 0.261 0.739 21 H 0.027 0.973 22 H 0.016 0.984 23 H 0.023 0.977 24 H 0.061 0.939 25 H 0.351 0.649 26 H 0.400 0.600 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.844 -16.358 -0.575 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.068 4.068 11 N -0.288 5.288 12 C 0.014 3.986 13 H 0.130 0.870 14 C 0.290 3.710 15 O -0.398 6.398 16 O -0.327 6.327 17 C -0.158 4.158 18 C -0.203 4.203 19 C -0.214 4.214 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.171 0.829 26 H 0.258 0.742 27 H 0.131 0.869 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.367 -15.962 -1.403 16.898 hybrid contribution 0.891 0.939 1.630 2.081 sum 6.258 -15.023 0.226 16.276 Atomic orbital electron populations 1.69972 1.06036 1.26601 1.50595 1.24997 0.94849 0.99216 0.95275 0.86572 0.79793 0.83410 0.78084 1.20608 1.21201 1.19947 1.21145 0.92960 0.90940 1.50969 0.92766 1.19050 0.93956 0.90176 0.97911 1.22325 0.97453 0.88089 0.98931 1.61001 1.17288 1.01183 1.49279 1.21142 0.97048 0.92771 0.87652 0.87038 1.25309 0.74937 0.76296 0.94456 1.90750 1.53184 1.49069 1.46818 1.84629 1.61047 1.51033 1.36002 1.22026 0.99683 0.92805 1.01278 1.22997 1.03318 1.03315 0.90658 1.23088 1.01844 0.94582 1.01839 0.92973 0.95496 0.96527 0.95870 0.92048 0.82865 0.74237 0.86911 0.88628 0.88598 0.87719 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.71 5.23 -27.89 -0.15 0.56 16 10 C 0.06 1.30 5.32 -3.83 -0.02 1.28 16 11 N -0.66 -12.03 6.10 -107.96 -0.66 -12.69 16 12 C 0.13 1.86 2.74 -68.86 -0.19 1.67 16 13 H 0.11 1.55 7.56 -51.93 -0.39 1.16 16 14 C 0.45 6.66 7.44 36.00 0.27 6.93 16 15 O -0.51 -9.50 16.06 -18.75 -0.30 -9.80 16 16 O -0.52 -5.63 11.36 -39.26 -0.45 -6.08 16 17 C -0.14 -1.69 5.44 -90.61 -0.49 -2.18 16 18 C -0.17 -1.72 10.18 -26.73 -0.27 -1.99 16 19 C -0.18 -1.73 9.45 -26.73 -0.25 -1.99 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.52 7.62 -51.93 -0.40 0.12 16 24 H 0.06 1.28 8.05 -51.93 -0.42 0.86 16 25 H 0.35 6.70 7.75 -39.30 -0.30 6.40 16 26 H 0.40 2.82 9.10 45.56 0.41 3.24 16 27 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 30 H 0.10 1.03 6.85 -51.93 -0.36 0.67 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -32.68 269.79 -6.67 -39.35 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.52 Total: 4.35 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.52 Total: -9.56 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.08 Total: -39.31 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.75 Total: -15.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.68 -6.67 -39.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054523480.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.176 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds