Wall clock time and date at job start Sun Mar 29 2020 21:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47088 * 270.00111 * 3 2 1 5 5 H 1.48503 * 109.46868 * 29.99978 * 3 2 1 6 6 H 1.48495 * 109.47347 * 149.99998 * 3 2 1 7 7 C 1.37885 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47226 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.46993 * 179.97438 * 10 9 7 12 12 C 1.46900 * 110.99894 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47389 * 324.99770 * 12 11 10 14 14 C 1.50697 * 109.47288 * 84.99960 * 12 11 10 15 15 O 1.20825 * 119.99647 * 0.02562 * 14 12 11 16 16 O 1.34232 * 120.00255 * 179.97438 * 14 12 11 17 17 C 1.53003 * 109.47204 * 205.00143 * 12 11 10 18 18 C 1.53001 * 117.51964 * 111.28382 * 17 12 11 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 12 20 20 H 0.97000 * 119.99773 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46958 * 59.99615 * 9 7 2 22 22 H 1.09005 * 109.46787 * 300.00511 * 9 7 2 23 23 H 1.08997 * 109.47333 * 59.99437 * 10 9 7 24 24 H 1.08998 * 109.46692 * 299.99738 * 10 9 7 25 25 H 1.00893 * 111.00203 * 303.94792 * 11 10 9 26 26 H 0.96703 * 117.00052 * 179.97438 * 16 14 12 27 27 H 1.09002 * 115.54973 * 325.58166 * 17 12 11 28 28 H 1.09001 * 117.49733 * 214.97413 * 18 17 12 29 29 H 1.08995 * 117.49577 * 359.97438 * 18 17 12 30 30 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 31 31 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 2.4351 -6.0759 -0.0005 13 1 3.3176 -5.8286 -0.5907 14 6 2.8485 -6.3883 1.4146 15 8 2.4169 -5.7279 2.3297 16 8 3.6954 -7.4008 1.6584 17 6 1.7396 -7.2950 -0.6096 18 6 2.2406 -7.7894 -1.9681 19 6 2.5432 -8.5938 -0.7023 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6044 0.8894 24 1 2.8718 -3.6043 -0.8905 25 1 0.8746 -4.9842 0.7817 26 1 3.9318 -7.5627 2.5821 27 1 0.6718 -7.3773 -0.4067 28 1 1.5024 -8.1968 -2.6589 29 1 3.0656 -7.2458 -2.4284 30 1 3.5674 -8.5795 -0.3296 31 1 2.0039 -9.5304 -0.5603 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054523480.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:36 Heat of formation + Delta-G solvation = -100.335666 kcal Electronic energy + Delta-G solvation = -14066.430929 eV Core-core repulsion = 11540.215365 eV Total energy + Delta-G solvation = -2526.215563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.60041 -38.53734 -37.48142 -36.47585 -34.84154 -31.76931 -28.36017 -25.72433 -23.61529 -23.06735 -22.46242 -21.17732 -19.22459 -18.54222 -18.10078 -16.98226 -16.66665 -16.42252 -15.76734 -15.19120 -14.95674 -14.56434 -14.10443 -13.71799 -13.15440 -12.90770 -12.71382 -12.54868 -12.40986 -12.27264 -12.12722 -11.95040 -11.54829 -11.38358 -11.09183 -10.87268 -10.58077 -9.64962 -8.21514 -6.33501 1.10157 1.39694 1.42046 1.52881 2.03448 2.39416 2.84735 3.11937 3.27383 3.72805 3.99909 4.07778 4.19073 4.42719 4.47981 4.52072 4.61027 4.92669 4.99874 5.10938 5.28133 5.38716 5.39573 5.53374 5.62380 5.71664 5.97370 6.12215 6.28531 6.82641 6.93770 7.35653 8.90984 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046666 B = 0.006169 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.865021 B = 4537.581262 C = 4803.657496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.080 3.920 11 N -0.660 5.660 12 C 0.126 3.874 13 H 0.122 0.878 14 C 0.459 3.541 15 O -0.556 6.556 16 O -0.498 6.498 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.155 4.155 20 H 0.265 0.735 21 H 0.002 0.998 22 H -0.014 1.014 23 H 0.013 0.987 24 H 0.072 0.928 25 H 0.344 0.656 26 H 0.421 0.579 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 -17.204 -1.081 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.048 4.048 11 N -0.290 5.290 12 C 0.013 3.987 13 H 0.140 0.860 14 C 0.301 3.699 15 O -0.447 6.447 16 O -0.310 6.310 17 C -0.179 4.179 18 C -0.198 4.198 19 C -0.192 4.192 20 H 0.073 0.927 21 H 0.020 0.980 22 H 0.004 0.996 23 H 0.031 0.969 24 H 0.091 0.909 25 H 0.163 0.837 26 H 0.282 0.718 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.060 -16.859 -1.915 18.378 hybrid contribution 0.383 1.081 1.798 2.133 sum 7.443 -15.778 -0.117 17.446 Atomic orbital electron populations 1.70111 1.07888 1.27892 1.51268 1.26005 0.95802 1.03486 0.94488 0.85378 0.78483 0.78066 0.78679 1.19332 1.20689 1.18887 1.21584 0.93535 0.92161 1.51197 0.92101 1.18890 0.94264 0.92194 0.95126 1.21918 0.95948 0.88123 0.98853 1.60908 1.17917 1.01085 1.49129 1.21204 0.97003 0.92332 0.88112 0.85991 1.25148 0.74617 0.76226 0.93892 1.90748 1.55029 1.50859 1.48023 1.84549 1.59474 1.49077 1.37907 1.21937 0.99534 0.93100 1.03317 1.23116 1.03441 1.02881 0.90382 1.23155 1.01619 0.93841 1.00618 0.92664 0.97987 0.99612 0.96912 0.90912 0.83667 0.71794 0.87564 0.87514 0.88263 0.87289 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -32.17 9.11 25.60 0.23 -31.94 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.82 5.23 29.85 0.16 1.98 16 10 C 0.08 3.53 5.32 86.30 0.46 3.99 16 11 N -0.66 -24.52 6.10 -495.46 -3.02 -27.54 16 12 C 0.13 3.56 2.74 44.17 0.12 3.68 16 13 H 0.12 3.19 7.56 -2.38 -0.02 3.17 16 14 C 0.46 13.09 7.44 71.23 0.53 13.62 16 15 O -0.56 -20.71 16.06 21.97 0.35 -20.35 16 16 O -0.50 -9.59 11.36 -51.44 -0.58 -10.17 16 17 C -0.16 -3.63 5.44 -10.79 -0.06 -3.69 16 18 C -0.16 -2.93 10.18 30.59 0.31 -2.62 16 19 C -0.16 -2.58 9.45 30.60 0.29 -2.29 16 20 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 21 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 22 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 23 H 0.01 0.58 7.62 -2.39 -0.02 0.56 16 24 H 0.07 3.01 8.05 -2.39 -0.02 2.99 16 25 H 0.34 13.62 7.75 -89.70 -0.70 12.93 16 26 H 0.42 4.78 9.10 -74.06 -0.67 4.11 16 27 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.10 1.75 8.05 -2.39 -0.02 1.73 16 30 H 0.11 1.75 6.85 -2.39 -0.02 1.73 16 31 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -71.16 269.79 1.33 -69.83 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -0.23 Total: 15.81 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 2.50 Total: -16.80 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.74 Total: -85.46 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.23 Total: -30.52 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -71.16 1.33 -69.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054523480.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.508 kcal (2) G-P(sol) polarization free energy of solvation -71.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds