Wall clock time and date at job start Sun Mar 29 2020 22:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86800 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47536 * 270.00090 * 3 2 1 5 5 H 1.48496 * 109.47215 * 30.00337 * 3 2 1 6 6 H 1.48505 * 109.47222 * 150.00342 * 3 2 1 7 7 C 1.37874 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00622 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99816 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99784 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99979 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.53175 * 109.54351 * 299.55662 * 13 11 10 15 15 C 1.53094 * 109.16661 * 183.15290 * 14 13 11 16 16 O 1.42898 * 109.41211 * 57.60371 * 15 14 13 17 17 C 1.42897 * 114.10001 * 298.84343 * 16 15 14 18 18 C 1.53089 * 109.41656 * 61.16248 * 17 16 15 19 19 H 0.97001 * 120.00330 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.46858 * 60.00067 * 9 7 2 21 21 H 1.09004 * 109.46826 * 300.00030 * 9 7 2 22 22 H 0.97002 * 120.00140 * 359.97438 * 10 9 7 23 23 H 1.09004 * 109.61503 * 59.77219 * 13 11 10 24 24 H 1.09004 * 109.52259 * 303.05556 * 14 13 11 25 25 H 1.09006 * 109.52330 * 63.24389 * 14 13 11 26 26 H 1.09006 * 109.47665 * 297.62062 * 15 14 13 27 27 H 1.08993 * 109.47955 * 177.58818 * 15 14 13 28 28 H 1.09002 * 109.48425 * 301.17758 * 17 16 15 29 29 H 1.09001 * 109.49443 * 181.15303 * 17 16 15 30 30 H 1.08997 * 109.52675 * 182.48845 * 18 17 16 31 31 H 1.08995 * 109.52428 * 62.29514 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5614 -5.1049 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 6 3.6072 -5.9550 -1.2573 15 6 4.5446 -7.1650 -1.2891 16 8 3.7710 -8.3660 -1.2563 17 6 2.9696 -8.5121 -0.0823 18 6 1.9689 -7.3563 -0.0021 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 3.1568 -3.4354 -0.0009 23 1 3.3639 -5.9714 0.8855 24 1 2.9728 -5.9624 -2.1437 25 1 4.1964 -5.0381 -1.2377 26 1 5.2062 -7.1349 -0.4233 27 1 5.1392 -7.1403 -2.2022 28 1 3.6106 -8.4997 0.7993 29 1 2.4297 -9.4580 -0.1258 30 1 1.3866 -7.4416 0.9153 31 1 1.3015 -7.3920 -0.8630 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058401605.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:43 Heat of formation + Delta-G solvation = -105.935753 kcal Electronic energy + Delta-G solvation = -14221.930290 eV Core-core repulsion = 11695.471889 eV Total energy + Delta-G solvation = -2526.458401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.85291 -38.12075 -34.24275 -33.53440 -32.28751 -31.05261 -27.59051 -25.47452 -23.51978 -22.56112 -20.67364 -19.41836 -17.37589 -16.12736 -16.05233 -15.60267 -15.10596 -14.85566 -14.58049 -14.06292 -13.62759 -13.31938 -12.69039 -12.34781 -11.98344 -11.77772 -11.35861 -11.29587 -11.00821 -10.90723 -10.65884 -10.40585 -10.32478 -9.74791 -9.41427 -8.92396 -8.75244 -7.89630 -6.18283 -4.25508 3.22794 3.28895 3.31235 3.33617 3.81382 4.06554 4.35116 4.72144 4.85080 4.95270 5.08188 5.17654 5.18298 5.39245 5.45908 5.61860 5.64727 5.71493 5.89926 6.05781 6.18296 6.37719 7.13158 7.29162 7.42309 7.50029 7.64602 7.95397 8.61151 8.76163 9.08734 9.41370 10.91976 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060310 B = 0.006166 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.159332 B = 4539.736261 C = 4891.964036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.711 5.711 11 C 0.502 3.498 12 O -0.555 6.555 13 C -0.111 4.111 14 C -0.147 4.147 15 C 0.064 3.936 16 O -0.386 6.386 17 C 0.061 3.939 18 C -0.134 4.134 19 H 0.266 0.734 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.390 0.610 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 -12.242 -0.309 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.287 3.713 12 O -0.435 6.435 13 C -0.133 4.133 14 C -0.185 4.185 15 C -0.013 4.013 16 O -0.304 6.304 17 C -0.015 4.015 18 C -0.173 4.173 19 H 0.076 0.924 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.222 0.778 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.444 -12.367 -0.449 14.981 hybrid contribution 0.816 1.392 0.273 1.636 sum 9.259 -10.975 -0.176 14.360 Atomic orbital electron populations 1.69970 1.06136 1.27331 1.48854 1.24954 0.94912 0.99474 0.94673 0.86410 0.79607 0.82624 0.78238 1.20435 1.20980 1.19755 1.21224 0.93235 0.90474 1.53280 0.91928 1.19109 0.88354 0.82036 0.97706 1.46470 1.11036 1.06192 1.72225 1.20361 0.89273 0.84325 0.77356 1.90651 1.16918 1.84927 1.50975 1.21380 0.97310 0.94912 0.99658 1.22191 0.98781 0.99426 0.98138 1.22577 0.92614 0.84013 1.02121 1.87911 1.59931 1.40501 1.42092 1.22632 0.92496 0.98729 0.87679 1.21985 0.98177 0.92677 1.04413 0.92420 0.95563 0.95588 0.77780 0.89066 0.90394 0.90129 0.93093 0.88705 0.93285 0.88764 0.90268 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.28 55.43 0.74 -25.45 16 2 C 0.06 1.77 5.46 -17.83 -0.10 1.67 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 10 N -0.71 -15.02 5.46 -61.47 -0.34 -15.35 16 11 C 0.50 10.10 7.16 -10.99 -0.08 10.02 16 12 O -0.56 -13.54 15.97 5.56 0.09 -13.45 16 13 C -0.11 -1.60 2.61 -91.59 -0.24 -1.84 16 14 C -0.15 -1.84 5.30 -26.59 -0.14 -1.98 16 15 C 0.06 0.67 6.84 37.21 0.25 0.93 16 16 O -0.39 -4.84 10.76 -35.23 -0.38 -5.22 16 17 C 0.06 0.68 6.84 37.20 0.25 0.93 16 18 C -0.13 -1.84 4.73 -26.59 -0.13 -1.96 16 19 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 20 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.39 7.01 7.84 -40.82 -0.32 6.69 16 23 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 0.91 7.70 -51.93 -0.40 0.51 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.24 8.02 -51.93 -0.42 0.82 16 LS Contribution 262.72 15.07 3.96 3.96 Total: -1.00 -32.24 262.72 -5.95 -38.19 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.47 Total: 2.26 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.52 Total: -0.72 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.40 Total: -40.81 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.29 Total: -18.67 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.24 -5.95 -38.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058401605.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.746 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds