Wall clock time and date at job start Sun Mar 29 2020 22:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86800 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47536 * 270.00090 * 3 2 1 5 5 H 1.48496 * 109.47215 * 30.00337 * 3 2 1 6 6 H 1.48505 * 109.47222 * 150.00342 * 3 2 1 7 7 C 1.37874 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00622 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99816 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99784 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99979 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.53175 * 109.54351 * 299.55662 * 13 11 10 15 15 C 1.53094 * 109.16661 * 183.15290 * 14 13 11 16 16 O 1.42898 * 109.41211 * 57.60371 * 15 14 13 17 17 C 1.42897 * 114.10001 * 298.84343 * 16 15 14 18 18 C 1.53089 * 109.41656 * 61.16248 * 17 16 15 19 19 H 0.97001 * 120.00330 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.46858 * 60.00067 * 9 7 2 21 21 H 1.09004 * 109.46826 * 300.00030 * 9 7 2 22 22 H 0.97002 * 120.00140 * 359.97438 * 10 9 7 23 23 H 1.09004 * 109.61503 * 59.77219 * 13 11 10 24 24 H 1.09004 * 109.52259 * 303.05556 * 14 13 11 25 25 H 1.09006 * 109.52330 * 63.24389 * 14 13 11 26 26 H 1.09006 * 109.47665 * 297.62062 * 15 14 13 27 27 H 1.08993 * 109.47955 * 177.58818 * 15 14 13 28 28 H 1.09002 * 109.48425 * 301.17758 * 17 16 15 29 29 H 1.09001 * 109.49443 * 181.15303 * 17 16 15 30 30 H 1.08997 * 109.52675 * 182.48845 * 18 17 16 31 31 H 1.08995 * 109.52428 * 62.29514 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5614 -5.1049 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 6 3.6072 -5.9550 -1.2573 15 6 4.5446 -7.1650 -1.2891 16 8 3.7710 -8.3660 -1.2563 17 6 2.9696 -8.5121 -0.0823 18 6 1.9689 -7.3563 -0.0021 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 3.1568 -3.4354 -0.0009 23 1 3.3639 -5.9714 0.8855 24 1 2.9728 -5.9624 -2.1437 25 1 4.1964 -5.0381 -1.2377 26 1 5.2062 -7.1349 -0.4233 27 1 5.1392 -7.1403 -2.2022 28 1 3.6106 -8.4997 0.7993 29 1 2.4297 -9.4580 -0.1258 30 1 1.3866 -7.4416 0.9153 31 1 1.3015 -7.3920 -0.8630 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058401605.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:42 Heat of formation + Delta-G solvation = -130.325618 kcal Electronic energy + Delta-G solvation = -14222.987914 eV Core-core repulsion = 11695.471889 eV Total energy + Delta-G solvation = -2527.516025 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.19374 -39.44372 -36.21181 -34.81649 -34.20366 -32.01250 -29.53997 -26.81621 -24.68590 -24.26203 -22.03586 -20.90234 -19.06079 -17.75176 -17.21889 -16.90452 -16.79840 -16.28058 -15.85431 -15.55195 -15.02115 -14.60616 -14.31309 -14.00970 -13.69902 -13.28298 -12.92156 -12.72947 -12.48781 -12.28707 -12.23137 -11.68693 -11.50459 -11.42193 -10.87407 -10.82491 -10.39039 -9.86630 -8.31070 -6.48352 1.42463 1.45015 1.56296 1.70544 2.30188 2.54360 3.02199 3.03919 3.62626 3.78472 3.81446 4.04056 4.30119 4.32622 4.54211 4.64119 4.70816 4.81086 4.85654 5.05996 5.13472 5.13881 5.20022 5.28572 5.46175 5.66200 5.82224 6.29162 6.62637 6.86607 7.21158 7.45295 8.81329 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060310 B = 0.006166 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.159332 B = 4539.736261 C = 4891.964036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.704 5.704 11 C 0.497 3.503 12 O -0.605 6.605 13 C -0.100 4.100 14 C -0.145 4.145 15 C 0.065 3.935 16 O -0.403 6.403 17 C 0.067 3.933 18 C -0.135 4.135 19 H 0.269 0.731 20 H -0.015 1.015 21 H -0.014 1.014 22 H 0.408 0.592 23 H 0.124 0.876 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.654 -12.395 0.021 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.142 3.858 10 N -0.354 5.354 11 C 0.284 3.716 12 O -0.487 6.487 13 C -0.121 4.121 14 C -0.183 4.183 15 C -0.011 4.011 16 O -0.322 6.322 17 C -0.009 4.009 18 C -0.173 4.173 19 H 0.078 0.922 20 H 0.003 0.997 21 H 0.004 0.996 22 H 0.244 0.756 23 H 0.142 0.858 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.670 -12.552 -0.122 17.139 hybrid contribution -0.238 1.387 0.164 1.417 sum 11.431 -11.165 0.042 15.979 Atomic orbital electron populations 1.70138 1.08384 1.28630 1.49942 1.26096 0.95771 1.04032 0.93767 0.85128 0.78502 0.76784 0.78627 1.19577 1.20984 1.17752 1.21618 0.94342 0.90482 1.52978 0.89662 1.18552 0.88783 0.84551 0.93937 1.46204 1.11144 1.05517 1.72512 1.21500 0.89721 0.85105 0.75243 1.90625 1.19684 1.85642 1.52786 1.21412 0.96318 0.92095 1.02235 1.22225 0.98637 1.01626 0.95811 1.22727 0.92046 0.82033 1.04315 1.87903 1.60194 1.41233 1.42876 1.22686 0.92110 0.97792 0.88309 1.22002 0.98643 0.93701 1.02963 0.92219 0.99729 0.99575 0.75561 0.85777 0.92702 0.88599 0.90507 0.86922 0.90722 0.87337 0.90728 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.28 21.44 0.28 -56.35 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.99 42.12 29.54 68.60 2.03 44.15 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.56 -30.32 9.28 25.60 0.24 -30.08 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.26 14.73 5.43 85.63 0.46 15.20 16 10 N -0.70 -29.99 5.46 -466.77 -2.55 -32.53 16 11 C 0.50 20.28 7.16 87.66 0.63 20.90 16 12 O -0.61 -30.96 15.97 -3.03 -0.05 -31.01 16 13 C -0.10 -2.71 2.61 -11.42 -0.03 -2.74 16 14 C -0.14 -3.30 5.30 30.68 0.16 -3.14 16 15 C 0.07 1.14 6.84 72.01 0.49 1.63 16 16 O -0.40 -8.93 10.76 -148.98 -1.60 -10.54 16 17 C 0.07 1.30 6.84 72.01 0.49 1.79 16 18 C -0.13 -3.57 4.73 30.68 0.15 -3.43 16 19 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 20 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 21 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 22 H 0.41 14.12 7.84 -92.71 -0.73 13.40 16 23 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 24 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.10 1.88 7.70 -2.38 -0.02 1.87 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 Total: -1.00 -73.04 262.72 1.56 -71.49 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.39 Total: 14.04 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 3.06 Total: 0.76 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -2.26 Total: -88.88 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.65 Total: -41.55 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -73.04 1.56 -71.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058401605.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.840 kcal (2) G-P(sol) polarization free energy of solvation -73.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds