Wall clock time and date at job start Sun Mar 29 2020 21:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99916 * 2 1 4 4 H 1.48506 * 109.47061 * 269.99483 * 3 2 1 5 5 H 1.48501 * 109.47441 * 29.99913 * 3 2 1 6 6 H 1.48507 * 109.47155 * 149.99791 * 3 2 1 7 7 C 1.37880 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00254 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99577 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46773 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00029 * 66.04899 * 10 9 7 12 12 C 1.50693 * 109.47481 * 64.30459 * 11 10 9 13 13 O 1.20828 * 119.99933 * 354.64265 * 12 11 10 14 14 O 1.34232 * 120.00366 * 174.64077 * 12 11 10 15 15 C 1.46907 * 110.99674 * 189.99785 * 10 9 7 16 16 C 1.52997 * 109.46652 * 164.27823 * 15 10 9 17 17 C 1.53004 * 117.49630 * 244.72178 * 16 15 10 18 18 C 1.53000 * 59.99944 * 252.51061 * 17 16 15 19 19 H 0.97007 * 119.99887 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47287 * 59.99779 * 9 7 2 21 21 H 1.08998 * 109.47148 * 299.99690 * 9 7 2 22 22 H 1.08996 * 109.46984 * 184.30922 * 11 10 9 23 23 H 1.09003 * 109.46850 * 304.30351 * 11 10 9 24 24 H 0.96697 * 117.00286 * 180.02562 * 14 12 11 25 25 H 1.08994 * 109.47008 * 284.27789 * 15 10 9 26 26 H 1.08994 * 109.46920 * 44.28166 * 15 10 9 27 27 H 1.09004 * 115.55505 * 30.42721 * 16 15 10 28 28 H 1.09003 * 117.50315 * 0.02562 * 17 16 15 29 29 H 1.09006 * 117.49751 * 145.02239 * 17 16 15 30 30 H 1.09000 * 117.50023 * 252.50764 * 18 17 16 31 31 H 1.09004 * 117.49372 * 107.49291 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9710 -3.6540 1.2539 12 6 2.0378 -3.9321 2.4040 13 8 0.8457 -3.9868 2.2150 14 8 2.5310 -4.1191 3.6383 15 6 1.5212 -4.8935 -0.2376 16 6 2.5500 -5.9598 -0.6188 17 6 2.4658 -6.5510 -2.0275 18 6 2.0442 -7.3898 -0.8193 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 3.7223 -4.4416 1.1969 23 1 3.4626 -2.6936 1.4089 24 1 1.8935 -4.2949 4.3438 25 1 0.9988 -5.2002 0.6685 26 1 0.8029 -4.7752 -1.0488 27 1 3.5417 -5.8330 -0.1843 28 1 1.6778 -6.1801 -2.6828 29 1 3.4023 -6.8132 -2.5200 30 1 2.7032 -8.2038 -0.5171 31 1 0.9785 -7.5709 -0.6797 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061895220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:41 Heat of formation + Delta-G solvation = -58.348596 kcal Electronic energy + Delta-G solvation = -14572.686915 eV Core-core repulsion = 12048.292047 eV Total energy + Delta-G solvation = -2524.394867 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01824 -37.58495 -35.98241 -34.80367 -32.45875 -28.13623 -27.73711 -24.34035 -22.13938 -22.04838 -20.59290 -19.52339 -17.60289 -16.70269 -15.85201 -15.60077 -15.04810 -14.71616 -14.12716 -14.04151 -13.28324 -12.80504 -12.16437 -11.96539 -11.41110 -11.32222 -11.12705 -11.00442 -10.83856 -10.64518 -10.44779 -10.29163 -10.13028 -9.87995 -9.48268 -9.18747 -8.42069 -7.30855 -6.00323 -4.02705 2.79134 3.32579 3.38447 3.41057 3.65793 4.05532 4.41765 4.75793 5.07811 5.23325 5.33309 5.37457 5.68423 5.78860 5.81722 5.93081 6.06637 6.10586 6.19219 6.32862 6.42154 6.64515 6.97085 7.20938 7.55930 7.75454 7.97661 8.15948 8.44859 8.50451 9.04405 9.60435 11.10046 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029319 B = 0.009415 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.791472 B = 2973.266346 C = 3489.129900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.172 3.828 10 N -0.503 5.503 11 C 0.070 3.930 12 C 0.445 3.555 13 O -0.506 6.506 14 O -0.530 6.530 15 C 0.066 3.934 16 C -0.140 4.140 17 C -0.176 4.176 18 C -0.189 4.189 19 H 0.261 0.739 20 H 0.030 0.970 21 H 0.030 0.970 22 H 0.096 0.904 23 H 0.124 0.876 24 H 0.395 0.605 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 -10.670 2.387 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.048 3.952 10 N -0.226 5.226 11 C -0.060 4.060 12 C 0.286 3.714 13 O -0.394 6.394 14 O -0.341 6.341 15 C -0.062 4.062 16 C -0.158 4.158 17 C -0.213 4.213 18 C -0.227 4.227 19 H 0.071 0.929 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.114 0.886 23 H 0.142 0.858 24 H 0.252 0.748 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.539 -10.388 1.610 11.882 hybrid contribution -0.668 0.736 1.057 1.451 sum 4.871 -9.652 2.668 11.136 Atomic orbital electron populations 1.69980 1.06053 1.26701 1.50593 1.24987 0.94851 0.99262 0.95458 0.86522 0.79672 0.83204 0.78134 1.20604 1.21360 1.19831 1.21192 0.93357 0.90120 1.50697 0.91898 1.20123 0.90516 0.86262 0.98299 1.62610 1.29564 1.03894 1.26521 1.22172 0.95487 1.04839 0.83536 1.25825 0.90078 0.71728 0.83753 1.90655 1.18181 1.46477 1.84067 1.84638 1.46035 1.83608 1.19826 1.21925 0.94253 0.88903 1.01153 1.22388 1.00761 0.93198 0.99489 1.22947 1.02758 1.04234 0.91319 1.22945 1.01437 0.94404 1.03909 0.92939 0.95178 0.95238 0.88567 0.85791 0.74761 0.92668 0.91068 0.87902 0.88904 0.89303 0.89316 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.40 8.45 -34.44 -0.29 -14.70 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.32 16 9 C 0.17 4.57 4.44 -4.97 -0.02 4.55 16 10 N -0.50 -10.77 4.66 -237.52 -1.11 -11.87 16 11 C 0.07 1.31 5.63 -4.98 -0.03 1.28 16 12 C 0.44 8.44 7.53 36.00 0.27 8.71 16 13 O -0.51 -11.31 12.50 -18.75 -0.23 -11.55 16 14 O -0.53 -8.04 13.42 -39.26 -0.53 -8.57 16 15 C 0.07 1.24 4.92 -3.82 -0.02 1.22 16 16 C -0.14 -2.12 5.73 -90.62 -0.52 -2.64 16 17 C -0.18 -2.37 10.18 -26.73 -0.27 -2.64 16 18 C -0.19 -2.42 10.25 -26.73 -0.27 -2.70 16 19 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 20 H 0.03 0.87 7.86 -51.93 -0.41 0.46 16 21 H 0.03 0.87 5.46 -51.93 -0.28 0.58 16 22 H 0.10 1.45 6.69 -51.93 -0.35 1.11 16 23 H 0.12 2.40 6.75 -51.93 -0.35 2.05 16 24 H 0.39 4.35 9.10 45.56 0.41 4.76 16 25 H 0.06 1.10 5.37 -51.93 -0.28 0.82 16 26 H 0.07 1.40 7.55 -51.93 -0.39 1.01 16 27 H 0.10 1.49 6.76 -51.93 -0.35 1.14 16 28 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 260.75 15.07 3.93 3.93 Total: -1.00 -32.13 260.75 -6.67 -38.79 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -3.19 Total: 4.36 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.25 Total: -5.40 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.37 Total: -38.19 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.76 Total: -20.12 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.13 -6.67 -38.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061895220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.557 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds