Wall clock time and date at job start Sun Mar 29 2020 22:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48504 * 109.47115 * 269.99659 * 3 2 1 5 5 H 1.48500 * 109.47218 * 29.99715 * 3 2 1 6 6 H 1.48500 * 109.47020 * 149.99790 * 3 2 1 7 7 C 1.37869 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00298 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47560 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00323 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99785 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00136 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.52457 * 60.12655 * 13 11 10 15 15 C 1.53178 * 109.52065 * 180.31615 * 13 11 10 16 16 C 1.53178 * 109.03511 * 176.88586 * 15 13 11 17 17 C 1.53096 * 109.16278 * 303.01594 * 16 15 13 18 18 O 1.42930 * 109.41898 * 57.61137 * 17 16 15 19 19 C 1.42904 * 114.08305 * 298.84863 * 18 17 16 20 20 H 0.96998 * 120.00086 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.47156 * 59.99308 * 9 7 2 22 22 H 1.09003 * 109.46723 * 300.00237 * 9 7 2 23 23 H 0.97004 * 119.99714 * 0.02562 * 10 9 7 24 24 H 1.09002 * 109.54461 * 296.74932 * 15 13 11 25 25 H 1.08992 * 109.54753 * 56.92737 * 15 13 11 26 26 H 1.08999 * 109.52488 * 62.92180 * 16 15 13 27 27 H 1.09004 * 109.52654 * 183.11392 * 16 15 13 28 28 H 1.09003 * 109.48254 * 177.58780 * 17 16 15 29 29 H 1.08992 * 109.48305 * 297.61902 * 17 16 15 30 30 H 1.09002 * 109.48241 * 301.16394 * 19 18 17 31 31 H 1.08999 * 109.47648 * 181.13988 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 0.0016 14 1 3.3589 -5.9727 0.8925 15 6 1.9686 -7.3560 -0.0058 16 6 2.9723 -8.5104 -0.0838 17 6 3.8440 -8.3351 -1.3301 18 8 4.5029 -7.0679 -1.2748 19 6 3.6141 -5.9492 -1.2480 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5566 0.8903 23 1 3.1568 -3.4354 0.0009 24 1 1.3820 -7.4440 0.9087 25 1 1.3046 -7.3894 -0.8695 26 1 3.6029 -8.5056 0.8053 27 1 2.4350 -9.4568 -0.1453 28 1 4.5885 -9.1304 -1.3679 29 1 3.2178 -8.3807 -2.2210 30 1 2.9848 -5.9634 -2.1379 31 1 4.1928 -5.0258 -1.2266 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062235382.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:01 Heat of formation + Delta-G solvation = -105.828791 kcal Electronic energy + Delta-G solvation = -14231.713475 eV Core-core repulsion = 11705.259712 eV Total energy + Delta-G solvation = -2526.453763 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.88325 -38.08999 -34.30397 -33.43378 -32.45023 -31.22143 -27.30589 -24.96608 -24.29530 -22.47654 -20.55053 -19.46045 -17.37425 -16.25376 -16.09913 -15.57115 -15.14690 -14.93904 -14.46463 -13.89079 -13.54819 -13.36483 -12.74059 -12.47899 -11.99548 -11.84498 -11.41377 -11.10454 -11.05135 -10.89050 -10.86296 -10.40712 -10.30819 -9.59522 -9.40896 -9.00612 -8.75209 -7.91652 -6.17916 -4.25090 3.23793 3.28819 3.30018 3.32500 3.76632 4.09449 4.36195 4.72518 4.85332 4.93192 4.98575 5.18294 5.18700 5.36691 5.50573 5.59292 5.71577 5.79662 5.86972 5.96535 6.18128 6.34515 7.09390 7.28574 7.40058 7.49311 7.64563 7.95270 8.59153 8.75638 9.05917 9.41706 10.92312 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059798 B = 0.006218 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.130009 B = 4501.635791 C = 4855.582110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.711 5.711 11 C 0.503 3.497 12 O -0.554 6.554 13 C -0.145 4.145 14 H 0.100 0.900 15 C -0.101 4.101 16 C -0.156 4.156 17 C 0.057 3.943 18 O -0.380 6.380 19 C 0.072 3.928 20 H 0.266 0.734 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.391 0.609 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.069 -13.268 -1.353 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.287 3.713 12 O -0.433 6.433 13 C -0.167 4.167 14 H 0.118 0.882 15 C -0.139 4.139 16 C -0.193 4.193 17 C -0.020 4.020 18 O -0.299 6.299 19 C -0.005 4.005 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.223 0.777 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.229 -13.240 -1.347 15.145 hybrid contribution 0.507 1.052 0.086 1.171 sum 7.737 -12.188 -1.261 14.491 Atomic orbital electron populations 1.69976 1.06133 1.27332 1.48891 1.24954 0.94914 0.99483 0.94653 0.86406 0.79628 0.82589 0.78243 1.20435 1.20997 1.19717 1.21227 0.93285 0.90441 1.53258 0.91857 1.19125 0.88340 0.82013 0.97758 1.46519 1.11151 1.06184 1.72064 1.20259 0.89202 0.84222 0.77575 1.90654 1.16828 1.84878 1.50935 1.22012 0.97885 0.95432 1.01327 0.88188 1.21372 0.96993 0.91629 1.03914 1.22229 0.98536 0.99166 0.99405 1.22615 0.96459 0.85987 0.96892 1.87941 1.33182 1.14018 1.94748 1.22538 0.92495 0.89718 0.95757 0.92431 0.95512 0.95519 0.77658 0.90797 0.91000 0.91062 0.90731 0.89003 0.93115 0.92493 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 10 N -0.71 -14.92 5.45 -61.47 -0.34 -15.26 16 11 C 0.50 10.03 7.16 -10.99 -0.08 9.96 16 12 O -0.55 -13.32 15.97 5.56 0.09 -13.23 16 13 C -0.14 -2.14 2.73 -91.63 -0.25 -2.39 16 14 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 15 C -0.10 -1.37 4.62 -26.55 -0.12 -1.49 16 16 C -0.16 -1.61 6.14 -26.59 -0.16 -1.77 16 17 C 0.06 0.60 6.84 37.21 0.25 0.85 16 18 O -0.38 -4.96 10.77 -35.23 -0.38 -5.34 16 19 C 0.07 0.97 6.00 37.21 0.22 1.19 16 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.39 7.03 7.79 -40.82 -0.32 6.71 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 1.04 8.03 -51.93 -0.42 0.63 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.26 7.64 -51.93 -0.40 0.87 16 LS Contribution 262.63 15.07 3.96 3.96 Total: -1.00 -31.69 262.63 -6.00 -37.69 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.47 Total: 2.25 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.58 Total: -0.49 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.40 Total: -40.65 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.29 Total: -18.57 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.69 -6.00 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062235382.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.134 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds