Wall clock time and date at job start Sun Mar 29 2020 22:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48504 * 109.47115 * 269.99659 * 3 2 1 5 5 H 1.48500 * 109.47218 * 29.99715 * 3 2 1 6 6 H 1.48500 * 109.47020 * 149.99790 * 3 2 1 7 7 C 1.37869 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00298 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47560 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00323 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99785 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00136 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.52457 * 60.12655 * 13 11 10 15 15 C 1.53178 * 109.52065 * 180.31615 * 13 11 10 16 16 C 1.53178 * 109.03511 * 176.88586 * 15 13 11 17 17 C 1.53096 * 109.16278 * 303.01594 * 16 15 13 18 18 O 1.42930 * 109.41898 * 57.61137 * 17 16 15 19 19 C 1.42904 * 114.08305 * 298.84863 * 18 17 16 20 20 H 0.96998 * 120.00086 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.47156 * 59.99308 * 9 7 2 22 22 H 1.09003 * 109.46723 * 300.00237 * 9 7 2 23 23 H 0.97004 * 119.99714 * 0.02562 * 10 9 7 24 24 H 1.09002 * 109.54461 * 296.74932 * 15 13 11 25 25 H 1.08992 * 109.54753 * 56.92737 * 15 13 11 26 26 H 1.08999 * 109.52488 * 62.92180 * 16 15 13 27 27 H 1.09004 * 109.52654 * 183.11392 * 16 15 13 28 28 H 1.09003 * 109.48254 * 177.58780 * 17 16 15 29 29 H 1.08992 * 109.48305 * 297.61902 * 17 16 15 30 30 H 1.09002 * 109.48241 * 301.16394 * 19 18 17 31 31 H 1.08999 * 109.47648 * 181.13988 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 0.0016 14 1 3.3589 -5.9727 0.8925 15 6 1.9686 -7.3560 -0.0058 16 6 2.9723 -8.5104 -0.0838 17 6 3.8440 -8.3351 -1.3301 18 8 4.5029 -7.0679 -1.2748 19 6 3.6141 -5.9492 -1.2480 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5566 0.8903 23 1 3.1568 -3.4354 0.0009 24 1 1.3820 -7.4440 0.9087 25 1 1.3046 -7.3894 -0.8695 26 1 3.6029 -8.5056 0.8053 27 1 2.4350 -9.4568 -0.1453 28 1 4.5885 -9.1304 -1.3679 29 1 3.2178 -8.3807 -2.2210 30 1 2.9848 -5.9634 -2.1379 31 1 4.1928 -5.0258 -1.2266 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062235382.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:00 Heat of formation + Delta-G solvation = -129.390255 kcal Electronic energy + Delta-G solvation = -14232.735177 eV Core-core repulsion = 11705.259712 eV Total energy + Delta-G solvation = -2527.475465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.24146 -39.45294 -36.23071 -34.60398 -34.38735 -32.37799 -29.28053 -26.07457 -25.62524 -24.24705 -21.86487 -20.93453 -19.07297 -17.75563 -17.29252 -17.16166 -16.76374 -16.16291 -16.03877 -15.37774 -14.98440 -14.61498 -14.19251 -13.99244 -13.78047 -13.43401 -12.93987 -12.73412 -12.55960 -12.23622 -12.13629 -11.87976 -11.50695 -11.35858 -10.83390 -10.81555 -10.47323 -9.87583 -8.30235 -6.47098 1.43412 1.45641 1.56992 1.65887 2.29474 2.50627 2.91784 3.04864 3.60675 3.79073 3.84781 4.00324 4.15422 4.30436 4.45907 4.62500 4.72226 4.82658 4.93632 5.04372 5.10279 5.13165 5.21498 5.32949 5.46073 5.65454 5.82931 6.15417 6.63483 6.84368 7.21758 7.42395 8.82033 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059798 B = 0.006218 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.130009 B = 4501.635791 C = 4855.582110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.264 3.736 10 N -0.705 5.705 11 C 0.501 3.499 12 O -0.599 6.599 13 C -0.131 4.131 14 H 0.121 0.879 15 C -0.104 4.104 16 C -0.145 4.145 17 C 0.049 3.951 18 O -0.386 6.386 19 C 0.077 3.923 20 H 0.269 0.731 21 H -0.011 1.011 22 H -0.013 1.013 23 H 0.408 0.592 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 -13.730 -1.372 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.142 3.858 10 N -0.354 5.354 11 C 0.288 3.712 12 O -0.481 6.481 13 C -0.153 4.153 14 H 0.139 0.861 15 C -0.142 4.142 16 C -0.183 4.183 17 C -0.027 4.027 18 O -0.305 6.305 19 C 0.000 4.000 20 H 0.078 0.922 21 H 0.007 0.993 22 H 0.005 0.995 23 H 0.244 0.756 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.138 0.862 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.879 -13.739 -1.369 16.977 hybrid contribution -0.357 1.100 0.090 1.160 sum 9.522 -12.638 -1.279 15.875 Atomic orbital electron populations 1.70138 1.08308 1.28602 1.49973 1.26067 0.95763 1.03933 0.93788 0.85146 0.78481 0.76900 0.78629 1.19551 1.20984 1.17903 1.21620 0.94346 0.90531 1.52942 0.89738 1.18576 0.88733 0.84380 0.94151 1.46261 1.11239 1.05554 1.72364 1.21227 0.89546 0.84841 0.75554 1.90631 1.19360 1.85539 1.52599 1.21996 0.96857 0.93261 1.03158 0.86123 1.21407 0.97605 0.92413 1.02742 1.22192 0.97788 0.98443 0.99860 1.22887 0.97351 0.85514 0.96951 1.87946 1.33241 1.14628 1.94673 1.22457 0.92356 0.90780 0.94418 0.92228 0.99344 0.99456 0.75558 0.91839 0.92560 0.90143 0.88534 0.86215 0.92822 0.93213 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.44 0.28 -56.03 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.23 29.54 68.60 2.03 44.26 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.56 -30.27 9.28 25.60 0.24 -30.03 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 9 C 0.26 14.58 5.43 85.63 0.46 15.05 16 10 N -0.70 -29.89 5.45 -466.78 -2.54 -32.43 16 11 C 0.50 20.27 7.16 87.66 0.63 20.90 16 12 O -0.60 -30.01 15.97 -3.03 -0.05 -30.06 16 13 C -0.13 -3.71 2.73 -11.45 -0.03 -3.74 16 14 H 0.12 2.97 8.14 -2.39 -0.02 2.96 16 15 C -0.10 -2.70 4.62 30.71 0.14 -2.56 16 16 C -0.15 -2.58 6.14 30.69 0.19 -2.39 16 17 C 0.05 0.86 6.84 72.01 0.49 1.36 16 18 O -0.39 -8.95 10.77 -148.98 -1.60 -10.55 16 19 C 0.08 1.94 6.00 72.01 0.43 2.37 16 20 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 21 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 22 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 23 H 0.41 14.27 7.79 -92.71 -0.72 13.55 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.11 2.52 7.64 -2.39 -0.02 2.51 16 Total: -1.00 -70.37 262.63 1.52 -68.85 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.39 Total: 14.33 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 3.02 Total: 1.64 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.26 Total: -88.46 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.65 Total: -40.61 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -70.37 1.52 -68.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062235382.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.542 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds