Wall clock time and date at job start Sun Mar 29 2020 22:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.45966 * 2 1 4 4 O 1.20826 * 119.99890 * 240.02836 * 3 2 1 5 5 O 1.34226 * 120.00099 * 60.02256 * 3 2 1 6 6 C 1.53033 * 109.46326 * 240.02326 * 2 1 3 7 7 C 1.53186 * 109.34172 * 301.34211 * 6 2 1 8 8 N 1.46938 * 108.77099 * 305.41258 * 7 6 2 9 9 C 1.36930 * 120.60307 * 233.57330 * 8 7 6 10 10 H 1.08001 * 120.00330 * 27.66765 * 9 8 7 11 11 C 1.38816 * 120.00154 * 207.65921 * 9 8 7 12 12 N 1.31623 * 119.99748 * 17.35845 * 11 9 8 13 13 Si 1.86801 * 120.00255 * 197.36421 * 11 9 8 14 14 H 1.48499 * 109.47108 * 59.99538 * 13 11 9 15 15 H 1.48501 * 109.47078 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46872 * 299.99914 * 13 11 9 17 17 C 1.46924 * 118.76259 * 53.55677 * 8 7 6 18 18 C 1.53047 * 109.44924 * 119.95818 * 2 1 3 19 19 H 1.09006 * 109.47148 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47474 * 299.97466 * 1 2 3 21 21 H 1.09000 * 109.47435 * 59.97900 * 1 2 3 22 22 H 0.96700 * 117.00122 * 180.02562 * 5 3 2 23 23 H 1.09000 * 109.49433 * 61.30744 * 6 2 1 24 24 H 1.08999 * 109.49960 * 181.37359 * 6 2 1 25 25 H 1.09008 * 109.58620 * 65.16310 * 7 6 2 26 26 H 1.08997 * 109.58931 * 185.58863 * 7 6 2 27 27 H 0.96998 * 119.99441 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.58361 * 186.62379 * 17 8 7 29 29 H 1.09000 * 109.70598 * 66.26871 * 17 8 7 30 30 H 1.08999 * 109.49333 * 178.60099 * 18 2 1 31 31 H 1.08993 * 109.49940 * 298.66963 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4210 0.0000 4 8 2.7262 1.8164 -0.9065 5 8 1.7080 2.2473 1.0069 6 6 2.0399 -0.7209 -1.2499 7 6 1.5001 -2.1545 -1.2644 8 7 1.8621 -2.8089 0.0004 9 6 2.5258 -4.0066 0.0005 10 1 3.1678 -4.2684 -0.8276 11 6 2.3737 -4.8843 1.0651 12 7 1.3603 -4.7447 1.8935 13 14 3.6071 -6.2634 1.3223 14 1 4.9603 -5.6860 1.5239 15 1 3.2226 -7.0547 2.5187 16 1 3.6185 -7.1463 0.1283 17 6 1.4990 -2.1540 1.2645 18 6 2.0396 -0.7207 1.2503 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5134 0.8902 21 1 -0.3634 0.5141 -0.8898 22 1 2.0532 3.1495 0.9629 23 1 1.6959 -0.1937 -2.1397 24 1 3.1296 -0.7427 -1.2382 25 1 0.4151 -2.1353 -1.3679 26 1 1.9391 -2.7018 -2.0985 27 1 1.2543 -5.3579 2.6376 28 1 1.9374 -2.7016 2.0987 29 1 0.4143 -2.1345 1.3700 30 1 3.1293 -0.7429 1.2386 31 1 1.6959 -0.1929 2.1399 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062844394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:27 Heat of formation + Delta-G solvation = -80.708074 kcal Electronic energy + Delta-G solvation = -15026.144299 eV Core-core repulsion = 12500.779852 eV Total energy + Delta-G solvation = -2525.364447 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.38425 -37.72541 -35.87336 -33.74512 -31.02231 -29.88821 -27.18034 -25.48951 -23.31285 -22.23241 -20.82641 -18.28344 -17.63743 -16.88500 -15.89919 -15.33515 -14.78226 -14.04561 -13.83052 -13.48389 -13.05016 -12.92808 -12.74377 -11.63039 -11.40657 -11.36378 -11.31431 -11.17579 -10.79385 -10.72337 -10.50233 -10.26960 -10.07005 -9.78251 -9.60679 -9.50701 -8.46066 -6.69012 -5.80371 -3.21890 2.49214 3.32689 3.39198 3.44496 3.46360 4.49385 5.07723 5.22861 5.30461 5.44598 5.51866 5.70905 6.00196 6.04602 6.07859 6.26809 6.41696 6.46663 6.53851 6.54751 6.66203 6.69203 6.83253 6.97011 7.30652 7.62626 7.79165 8.14886 8.43609 9.19952 9.83063 10.39431 11.28431 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052202 B = 0.008701 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.253027 B = 3217.278240 C = 3285.277237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C 0.486 3.514 4 O -0.525 6.525 5 O -0.515 6.515 6 C -0.113 4.113 7 C 0.145 3.855 8 N -0.592 5.592 9 C -0.253 4.253 10 H 0.066 0.934 11 C 0.002 3.998 12 N -0.903 5.903 13 Si 0.903 3.097 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.172 3.828 18 C -0.130 4.130 19 H 0.086 0.914 20 H 0.061 0.939 21 H 0.050 0.950 22 H 0.400 0.600 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.255 0.745 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 9.941 -1.261 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.042 4.042 3 C 0.329 3.671 4 O -0.413 6.413 5 O -0.326 6.326 6 C -0.153 4.153 7 C 0.019 3.981 8 N -0.315 5.315 9 C -0.383 4.383 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.547 5.547 13 Si 0.732 3.268 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.046 3.954 18 C -0.169 4.169 19 H 0.105 0.895 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.257 0.743 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.259 9.505 -1.351 9.683 hybrid contribution 0.926 0.033 0.157 0.939 sum -0.333 9.539 -1.194 9.619 Atomic orbital electron populations 1.21925 0.92179 1.04255 1.01457 1.20525 0.97526 0.85767 1.00335 1.24156 0.76305 0.88779 0.77870 1.90652 1.36522 1.77322 1.36813 1.84607 1.72241 1.26891 1.48853 1.22011 1.01418 0.97744 0.94088 1.20972 0.96582 0.90178 0.90362 1.44073 1.66782 1.21215 0.99425 1.19162 1.19413 0.93433 1.06295 0.91644 1.25027 0.97120 0.97559 0.99896 1.70013 1.27847 1.38939 1.17946 0.86365 0.81282 0.81764 0.77339 1.21052 1.21632 1.20885 1.20828 0.96874 0.87071 0.90623 1.22313 1.00855 1.00011 0.93719 0.89531 0.91966 0.93108 0.74298 0.92293 0.91560 0.95823 0.92320 0.93549 0.89057 0.95539 0.92293 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.64 37.16 0.28 -1.92 16 2 C -0.04 -0.70 0.71 -155.62 -0.11 -0.81 16 3 C 0.49 8.02 6.92 36.01 0.25 8.27 16 4 O -0.52 -9.85 16.74 -18.75 -0.31 -10.16 16 5 O -0.52 -6.78 13.20 -39.25 -0.52 -7.30 16 6 C -0.11 -2.10 4.20 -26.62 -0.11 -2.21 16 7 C 0.15 3.01 6.05 -3.71 -0.02 2.99 16 8 N -0.59 -14.55 3.00 -172.31 -0.52 -15.07 16 9 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 10 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 11 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 12 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 13 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.17 3.96 4.84 -3.71 -0.02 3.94 16 18 C -0.13 -2.47 4.84 -26.61 -0.13 -2.60 16 19 H 0.09 1.49 4.98 -51.93 -0.26 1.23 16 20 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.40 3.33 9.10 45.56 0.41 3.75 16 23 H 0.06 1.00 8.07 -51.93 -0.42 0.59 16 24 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 25 H 0.02 0.48 6.70 -51.92 -0.35 0.13 16 26 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 29 H 0.03 0.62 6.70 -51.93 -0.35 0.28 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 LS Contribution 251.05 15.07 3.78 3.78 Total: -1.00 -30.54 251.05 -5.40 -35.94 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -3.34 Total: 0.74 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.09 Total: 0.61 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.10 Total: -40.12 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.83 Total: -17.46 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.54 -5.40 -35.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062844394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.764 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds