Wall clock time and date at job start Sun Mar 29 2020 22:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.45966 * 2 1 4 4 O 1.20826 * 119.99890 * 240.02836 * 3 2 1 5 5 O 1.34226 * 120.00099 * 60.02256 * 3 2 1 6 6 C 1.53033 * 109.46326 * 240.02326 * 2 1 3 7 7 C 1.53186 * 109.34172 * 301.34211 * 6 2 1 8 8 N 1.46938 * 108.77099 * 305.41258 * 7 6 2 9 9 C 1.36930 * 120.60307 * 233.57330 * 8 7 6 10 10 H 1.08001 * 120.00330 * 27.66765 * 9 8 7 11 11 C 1.38816 * 120.00154 * 207.65921 * 9 8 7 12 12 N 1.31623 * 119.99748 * 17.35845 * 11 9 8 13 13 Si 1.86801 * 120.00255 * 197.36421 * 11 9 8 14 14 H 1.48499 * 109.47108 * 59.99538 * 13 11 9 15 15 H 1.48501 * 109.47078 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46872 * 299.99914 * 13 11 9 17 17 C 1.46924 * 118.76259 * 53.55677 * 8 7 6 18 18 C 1.53047 * 109.44924 * 119.95818 * 2 1 3 19 19 H 1.09006 * 109.47148 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47474 * 299.97466 * 1 2 3 21 21 H 1.09000 * 109.47435 * 59.97900 * 1 2 3 22 22 H 0.96700 * 117.00122 * 180.02562 * 5 3 2 23 23 H 1.09000 * 109.49433 * 61.30744 * 6 2 1 24 24 H 1.08999 * 109.49960 * 181.37359 * 6 2 1 25 25 H 1.09008 * 109.58620 * 65.16310 * 7 6 2 26 26 H 1.08997 * 109.58931 * 185.58863 * 7 6 2 27 27 H 0.96998 * 119.99441 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.58361 * 186.62379 * 17 8 7 29 29 H 1.09000 * 109.70598 * 66.26871 * 17 8 7 30 30 H 1.08999 * 109.49333 * 178.60099 * 18 2 1 31 31 H 1.08993 * 109.49940 * 298.66963 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4210 0.0000 4 8 2.7262 1.8164 -0.9065 5 8 1.7080 2.2473 1.0069 6 6 2.0399 -0.7209 -1.2499 7 6 1.5001 -2.1545 -1.2644 8 7 1.8621 -2.8089 0.0004 9 6 2.5258 -4.0066 0.0005 10 1 3.1678 -4.2684 -0.8276 11 6 2.3737 -4.8843 1.0651 12 7 1.3603 -4.7447 1.8935 13 14 3.6071 -6.2634 1.3223 14 1 4.9603 -5.6860 1.5239 15 1 3.2226 -7.0547 2.5187 16 1 3.6185 -7.1463 0.1283 17 6 1.4990 -2.1540 1.2645 18 6 2.0396 -0.7207 1.2503 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5134 0.8902 21 1 -0.3634 0.5141 -0.8898 22 1 2.0532 3.1495 0.9629 23 1 1.6959 -0.1937 -2.1397 24 1 3.1296 -0.7427 -1.2382 25 1 0.4151 -2.1353 -1.3679 26 1 1.9391 -2.7018 -2.0985 27 1 1.2543 -5.3579 2.6376 28 1 1.9374 -2.7016 2.0987 29 1 0.4143 -2.1345 1.3700 30 1 3.1293 -0.7429 1.2386 31 1 1.6959 -0.1929 2.1399 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062844394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:26 Heat of formation + Delta-G solvation = -100.928550 kcal Electronic energy + Delta-G solvation = -15027.021124 eV Core-core repulsion = 12500.779852 eV Total energy + Delta-G solvation = -2526.241273 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.71183 -39.26677 -37.09061 -35.54821 -32.87922 -31.59291 -28.76102 -27.09810 -24.96783 -23.88600 -22.39687 -19.86647 -18.95887 -18.54660 -17.45218 -16.71354 -16.63188 -15.58430 -15.52924 -15.07583 -14.71306 -14.46166 -14.26454 -13.28062 -13.03547 -12.91672 -12.74603 -12.56142 -12.54231 -12.41290 -12.21934 -12.00975 -11.78867 -11.38837 -11.24383 -11.15959 -10.49468 -8.66220 -7.86590 -5.30230 1.20361 1.48294 1.50437 1.57083 2.14406 2.52663 3.28653 3.65337 3.70263 3.85170 4.03915 4.40416 4.45468 4.60846 4.69415 4.77092 4.90023 4.97250 5.00634 5.08902 5.14801 5.29651 5.39781 5.47120 5.60807 5.66896 5.78351 6.40773 7.03385 7.16847 7.87351 8.38447 9.19794 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052202 B = 0.008701 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.253027 B = 3217.278240 C = 3285.277237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 C 0.498 3.502 4 O -0.549 6.549 5 O -0.504 6.504 6 C -0.104 4.104 7 C 0.144 3.856 8 N -0.611 5.611 9 C -0.266 4.266 10 H 0.063 0.937 11 C -0.046 4.046 12 N -0.930 5.930 13 Si 0.964 3.036 14 H -0.282 1.282 15 H -0.292 1.292 16 H -0.277 1.277 17 C 0.179 3.821 18 C -0.117 4.117 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.425 0.575 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.251 0.749 28 H 0.056 0.944 29 H 0.018 0.982 30 H 0.045 0.955 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 11.257 -1.474 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.044 4.044 3 C 0.342 3.658 4 O -0.440 6.440 5 O -0.317 6.317 6 C -0.143 4.143 7 C 0.019 3.981 8 N -0.334 5.334 9 C -0.397 4.397 10 H 0.081 0.919 11 C -0.242 4.242 12 N -0.576 5.576 13 Si 0.792 3.208 14 H -0.208 1.208 15 H -0.218 1.218 16 H -0.202 1.202 17 C 0.054 3.946 18 C -0.156 4.156 19 H 0.085 0.915 20 H 0.096 0.904 21 H 0.089 0.911 22 H 0.286 0.714 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.300 10.863 -1.568 11.053 hybrid contribution 0.909 -0.313 0.221 0.986 sum -0.391 10.551 -1.347 10.644 Atomic orbital electron populations 1.21863 0.90533 1.03515 1.03248 1.20427 0.98818 0.86599 0.98534 1.23633 0.75646 0.88536 0.78030 1.90659 1.37558 1.77785 1.37964 1.84524 1.71761 1.28371 1.47077 1.21839 1.00201 0.96495 0.95731 1.21073 0.97115 0.91256 0.88673 1.44316 1.66997 1.21012 1.01107 1.19456 1.19494 0.94422 1.06284 0.91883 1.25717 0.98676 0.99907 0.99917 1.70147 1.29267 1.39823 1.18328 0.85403 0.79118 0.79191 0.77094 1.20786 1.21834 1.20234 1.20621 0.96139 0.88825 0.89059 1.22084 0.99838 0.97853 0.95803 0.91463 0.90437 0.91126 0.71389 0.90361 0.93282 0.94943 0.92588 0.93994 0.92525 0.96360 0.93596 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 7.64 71.98 0.55 -3.30 16 2 C -0.04 -1.39 0.71 -52.90 -0.04 -1.43 16 3 C 0.50 14.95 6.92 71.24 0.49 15.45 16 4 O -0.55 -19.20 16.74 21.96 0.37 -18.84 16 5 O -0.50 -11.32 13.20 -51.37 -0.68 -12.00 16 6 C -0.10 -3.69 4.20 30.67 0.13 -3.56 16 7 C 0.14 5.89 6.05 86.36 0.52 6.42 16 8 N -0.61 -30.24 3.00 -699.07 -2.09 -32.33 16 9 C -0.27 -14.62 9.58 84.04 0.81 -13.82 16 10 H 0.06 3.41 7.89 -2.91 -0.02 3.38 16 11 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16 12 N -0.93 -53.82 11.19 21.65 0.24 -53.58 16 13 Si 0.96 44.68 29.59 68.60 2.03 46.71 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 17 C 0.18 8.32 4.84 86.36 0.42 8.73 16 18 C -0.12 -4.32 4.84 30.68 0.15 -4.17 16 19 H 0.07 2.21 4.98 -2.38 -0.01 2.20 16 20 H 0.08 1.98 8.11 -2.39 -0.02 1.96 16 21 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.42 5.32 9.10 -74.06 -0.67 4.64 16 23 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 24 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 25 H 0.03 1.28 6.70 -2.38 -0.02 1.27 16 26 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.06 3.02 6.04 -2.39 -0.01 3.00 16 29 H 0.02 0.87 6.70 -2.39 -0.02 0.86 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 Total: -1.00 -64.85 251.05 3.77 -61.08 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.46 Total: 6.78 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 3.45 Total: 2.17 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.85 Total: -85.91 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.31 Total: -30.83 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.85 3.77 -61.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062844394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.847 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds