Wall clock time and date at job start Sun Mar 29 2020 21:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46702 * 2 1 4 4 C 1.46901 * 110.99853 * 81.81790 * 3 2 1 5 5 C 1.52996 * 109.47152 * 286.27818 * 4 3 2 6 6 C 1.46899 * 110.99833 * 205.76725 * 3 2 1 7 7 H 1.08999 * 110.88828 * 54.69194 * 6 3 2 8 8 C 1.55155 * 111.03863 * 178.59037 * 6 3 2 9 9 C 1.54331 * 102.94300 * 153.59175 * 8 6 3 10 10 N 1.47284 * 107.30295 * 337.81871 * 9 8 6 11 11 C 1.36939 * 125.79029 * 178.92167 * 10 9 8 12 12 H 1.08000 * 120.00022 * 180.02562 * 11 10 9 13 13 C 1.38813 * 119.99938 * 0.02562 * 11 10 9 14 14 N 1.31625 * 120.00039 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00078 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47295 * 59.99815 * 15 13 11 17 17 H 1.48504 * 109.47191 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46752 * 299.99839 * 15 13 11 19 19 C 1.47420 * 108.56106 * 358.92665 * 10 9 8 20 20 H 1.09003 * 109.46790 * 289.62833 * 1 2 3 21 21 H 1.08994 * 109.47312 * 49.62500 * 1 2 3 22 22 H 1.09004 * 109.47038 * 169.62769 * 1 2 3 23 23 H 1.08997 * 109.46824 * 240.00559 * 2 1 3 24 24 H 1.08999 * 109.47520 * 120.00384 * 2 1 3 25 25 H 1.09007 * 109.46860 * 46.27839 * 4 3 2 26 26 H 1.08999 * 109.47102 * 166.27007 * 4 3 2 27 27 H 1.08997 * 109.47098 * 319.09368 * 5 4 3 28 28 H 1.08997 * 109.47286 * 79.09508 * 5 4 3 29 29 H 1.09003 * 109.47138 * 199.09968 * 5 4 3 30 30 H 1.08997 * 110.72490 * 271.95934 * 8 6 3 31 31 H 1.09008 * 110.72043 * 35.22990 * 8 6 3 32 32 H 1.08996 * 109.87687 * 97.22674 * 9 8 6 33 33 H 1.08998 * 109.87981 * 218.23713 * 9 8 6 34 34 H 0.97003 * 119.99719 * 180.02562 * 14 13 11 35 35 H 1.09001 * 110.36322 * 265.25724 * 19 10 9 36 36 H 1.08998 * 110.36737 * 143.04965 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0110 1.9464 1.3575 5 6 0.5706 2.2490 1.7751 6 6 3.3595 1.4697 -0.5962 7 1 3.3693 1.0312 -1.5940 8 6 3.8629 2.9370 -0.6288 9 6 5.3977 2.7765 -0.6061 10 7 5.6910 1.4503 -0.0365 11 6 6.9379 0.9114 0.1373 12 1 7.0452 -0.0742 0.5658 13 6 8.0638 1.6318 -0.2372 14 7 7.9329 2.8327 -0.7599 15 14 9.7646 0.8964 -0.0007 16 1 9.8709 -0.3648 -0.7774 17 1 10.7906 1.8590 -0.4760 18 1 9.9843 0.6106 1.4399 19 6 4.4165 0.7985 0.3158 20 1 -0.3633 0.3452 0.9680 21 1 -0.3633 0.6657 -0.7828 22 1 -0.3633 -1.0109 -0.1850 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.4469 1.2270 2.0509 26 1 2.5951 2.8665 1.3739 27 1 0.0308 2.6802 0.9320 28 1 0.0810 1.3263 2.0863 29 1 0.5737 2.9563 2.6045 30 1 3.5407 3.4351 -1.5432 31 1 3.5192 3.4823 0.2503 32 1 5.7919 2.8393 -1.6204 33 1 5.8427 3.5551 0.0134 34 1 8.7197 3.3359 -1.0219 35 1 4.1784 0.9734 1.3650 36 1 4.4686 -0.2711 0.1126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062979861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:24 Heat of formation + Delta-G solvation = 35.470042 kcal Electronic energy + Delta-G solvation = -14961.672291 eV Core-core repulsion = 12674.897462 eV Total energy + Delta-G solvation = -2286.774829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.87717 -35.75492 -32.38199 -30.95886 -29.98971 -28.75018 -26.18918 -24.23044 -22.80804 -21.58573 -19.93384 -18.92715 -16.85521 -15.90106 -15.33305 -14.71079 -14.47371 -13.96521 -13.16284 -12.79243 -12.65766 -12.46869 -12.20430 -12.07107 -11.84236 -11.39379 -11.21410 -10.98540 -10.82277 -10.70386 -10.47879 -10.23483 -10.08349 -9.87001 -9.66081 -9.57534 -8.57455 -7.94381 -6.77698 -5.68374 -3.01791 3.41794 3.45689 3.47263 4.19731 4.53330 5.11488 5.24141 5.40831 5.44802 5.52023 5.57944 5.67593 5.71947 5.77571 5.83946 5.89969 5.93362 6.02643 6.10785 6.19548 6.37052 6.38047 6.49278 6.54155 6.59508 6.72638 6.84123 7.48293 7.52946 7.59185 7.67164 7.85934 8.28941 9.24638 9.85108 10.52157 11.43327 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056308 B = 0.007355 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.143226 B = 3806.040710 C = 3976.314171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 N -0.527 5.527 4 C 0.041 3.959 5 C -0.149 4.149 6 C 0.068 3.932 7 H 0.086 0.914 8 C -0.139 4.139 9 C 0.177 3.823 10 N -0.603 5.603 11 C -0.229 4.229 12 H 0.075 0.925 13 C -0.008 4.008 14 N -0.922 5.922 15 Si 0.912 3.088 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.286 1.286 19 C 0.108 3.892 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.019 0.981 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.067 -2.264 2.173 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.078 4.078 3 N -0.251 5.251 4 C -0.087 4.087 5 C -0.206 4.206 6 C -0.041 4.041 7 H 0.104 0.896 8 C -0.177 4.177 9 C 0.052 3.948 10 N -0.330 5.330 11 C -0.357 4.357 12 H 0.093 0.907 13 C -0.205 4.205 14 N -0.570 5.570 15 Si 0.742 3.258 16 H -0.212 1.212 17 H -0.215 1.215 18 H -0.212 1.212 19 C -0.020 4.020 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.162 -1.912 1.834 13.426 hybrid contribution 1.573 -0.883 0.610 1.904 sum -11.589 -2.795 2.444 12.169 Atomic orbital electron populations 1.22070 0.95531 1.00848 1.02646 1.22064 0.95649 0.89380 1.00731 1.62289 1.24179 1.18485 1.20097 1.22245 0.97001 1.00360 0.89051 1.22030 0.96852 1.00844 1.00894 1.23012 0.85619 0.97574 0.97873 0.89580 1.23044 0.98917 0.94847 1.00894 1.21202 0.87503 0.87409 0.98658 1.44445 1.00198 1.15390 1.72987 1.19014 0.81724 0.99641 1.35356 0.90669 1.24801 0.97818 0.96660 1.01173 1.69961 1.28045 1.11404 1.47578 0.86199 0.83881 0.77925 0.77757 1.21185 1.21538 1.21224 1.22179 0.87855 0.95848 0.96081 0.92021 0.92053 0.93234 0.91469 0.94666 0.94558 0.90076 0.91763 0.92743 0.93034 0.91918 0.91888 0.93580 0.94021 0.93712 0.96387 0.94963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.42 37.16 0.35 -1.37 16 2 C 0.05 0.69 5.29 -3.82 -0.02 0.67 16 3 N -0.53 -8.20 4.48 -224.09 -1.00 -9.21 16 4 C 0.04 0.61 4.57 -3.83 -0.02 0.59 16 5 C -0.15 -1.76 8.66 37.16 0.32 -1.43 16 6 C 0.07 1.27 3.06 -65.57 -0.20 1.07 16 7 H 0.09 1.63 7.98 -51.93 -0.41 1.22 16 8 C -0.14 -2.72 6.42 -24.89 -0.16 -2.88 16 9 C 0.18 4.44 5.38 -2.92 -0.02 4.42 16 10 N -0.60 -15.98 3.40 -169.87 -0.58 -16.56 16 11 C -0.23 -6.58 10.28 -15.06 -0.15 -6.74 16 12 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 13 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 14 N -0.92 -27.67 10.34 55.49 0.57 -27.09 16 15 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 C 0.11 2.35 6.18 -2.53 -0.02 2.33 16 20 H 0.06 0.65 4.87 -51.93 -0.25 0.40 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 24 H 0.04 0.49 7.64 -51.93 -0.40 0.10 16 25 H 0.04 0.56 6.52 -51.93 -0.34 0.23 16 26 H 0.08 1.30 5.39 -51.93 -0.28 1.02 16 27 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.05 0.59 5.76 -51.93 -0.30 0.29 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.17 5.57 -51.92 -0.29 0.89 16 32 H 0.05 1.27 7.39 -51.93 -0.38 0.88 16 33 H 0.04 1.15 7.52 -51.93 -0.39 0.76 16 34 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.02 0.40 6.00 -51.93 -0.31 0.09 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 271.20 15.07 4.09 4.09 Total: -1.00 -30.11 271.20 -7.79 -37.90 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.84 Total: -2.93 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.01 Total: -3.68 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -1.01 Total: -52.86 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.11 -7.79 -37.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062979861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.369 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds