Wall clock time and date at job start Sun Mar 29 2020 21:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46702 * 2 1 4 4 C 1.46901 * 110.99853 * 81.81790 * 3 2 1 5 5 C 1.52996 * 109.47152 * 286.27818 * 4 3 2 6 6 C 1.46899 * 110.99833 * 205.76725 * 3 2 1 7 7 H 1.08999 * 110.88828 * 54.69194 * 6 3 2 8 8 C 1.55155 * 111.03863 * 178.59037 * 6 3 2 9 9 C 1.54331 * 102.94300 * 153.59175 * 8 6 3 10 10 N 1.47284 * 107.30295 * 337.81871 * 9 8 6 11 11 C 1.36939 * 125.79029 * 178.92167 * 10 9 8 12 12 H 1.08000 * 120.00022 * 180.02562 * 11 10 9 13 13 C 1.38813 * 119.99938 * 0.02562 * 11 10 9 14 14 N 1.31625 * 120.00039 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00078 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47295 * 59.99815 * 15 13 11 17 17 H 1.48504 * 109.47191 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46752 * 299.99839 * 15 13 11 19 19 C 1.47420 * 108.56106 * 358.92665 * 10 9 8 20 20 H 1.09003 * 109.46790 * 289.62833 * 1 2 3 21 21 H 1.08994 * 109.47312 * 49.62500 * 1 2 3 22 22 H 1.09004 * 109.47038 * 169.62769 * 1 2 3 23 23 H 1.08997 * 109.46824 * 240.00559 * 2 1 3 24 24 H 1.08999 * 109.47520 * 120.00384 * 2 1 3 25 25 H 1.09007 * 109.46860 * 46.27839 * 4 3 2 26 26 H 1.08999 * 109.47102 * 166.27007 * 4 3 2 27 27 H 1.08997 * 109.47098 * 319.09368 * 5 4 3 28 28 H 1.08997 * 109.47286 * 79.09508 * 5 4 3 29 29 H 1.09003 * 109.47138 * 199.09968 * 5 4 3 30 30 H 1.08997 * 110.72490 * 271.95934 * 8 6 3 31 31 H 1.09008 * 110.72043 * 35.22990 * 8 6 3 32 32 H 1.08996 * 109.87687 * 97.22674 * 9 8 6 33 33 H 1.08998 * 109.87981 * 218.23713 * 9 8 6 34 34 H 0.97003 * 119.99719 * 180.02562 * 14 13 11 35 35 H 1.09001 * 110.36322 * 265.25724 * 19 10 9 36 36 H 1.08998 * 110.36737 * 143.04965 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0110 1.9464 1.3575 5 6 0.5706 2.2490 1.7751 6 6 3.3595 1.4697 -0.5962 7 1 3.3693 1.0312 -1.5940 8 6 3.8629 2.9370 -0.6288 9 6 5.3977 2.7765 -0.6061 10 7 5.6910 1.4503 -0.0365 11 6 6.9379 0.9114 0.1373 12 1 7.0452 -0.0742 0.5658 13 6 8.0638 1.6318 -0.2372 14 7 7.9329 2.8327 -0.7599 15 14 9.7646 0.8964 -0.0007 16 1 9.8709 -0.3648 -0.7774 17 1 10.7906 1.8590 -0.4760 18 1 9.9843 0.6106 1.4399 19 6 4.4165 0.7985 0.3158 20 1 -0.3633 0.3452 0.9680 21 1 -0.3633 0.6657 -0.7828 22 1 -0.3633 -1.0109 -0.1850 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.4469 1.2270 2.0509 26 1 2.5951 2.8665 1.3739 27 1 0.0308 2.6802 0.9320 28 1 0.0810 1.3263 2.0863 29 1 0.5737 2.9563 2.6045 30 1 3.5407 3.4351 -1.5432 31 1 3.5192 3.4823 0.2503 32 1 5.7919 2.8393 -1.6204 33 1 5.8427 3.5551 0.0134 34 1 8.7197 3.3359 -1.0219 35 1 4.1784 0.9734 1.3650 36 1 4.4686 -0.2711 0.1126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062979861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:24 Heat of formation + Delta-G solvation = 15.871455 kcal Electronic energy + Delta-G solvation = -14962.522149 eV Core-core repulsion = 12674.897462 eV Total energy + Delta-G solvation = -2287.624688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36791 -37.39590 -34.31858 -32.03722 -31.63102 -30.41442 -27.91158 -26.15457 -23.92125 -22.96566 -21.80774 -20.37514 -18.91548 -17.37099 -16.69045 -16.55600 -15.91266 -15.64124 -14.73272 -14.32582 -14.23934 -13.78856 -13.63297 -13.37348 -13.23080 -12.98780 -12.74872 -12.62450 -12.26864 -12.18255 -12.07918 -11.97616 -11.74004 -11.69294 -11.35494 -11.00236 -10.70149 -9.33082 -8.86366 -7.87886 -5.24457 1.43163 1.47040 1.53604 2.46657 2.91943 3.29799 3.73854 3.86203 4.00563 4.05770 4.22401 4.33114 4.49220 4.56673 4.61858 4.67145 4.72599 4.75570 4.85286 4.93237 5.00720 5.04002 5.21884 5.24086 5.27261 5.39768 5.42218 5.59565 5.64210 5.71801 6.10574 6.21397 6.27918 7.06345 7.73144 8.38780 9.22404 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056308 B = 0.007355 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.143226 B = 3806.040710 C = 3976.314171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 N -0.520 5.520 4 C 0.039 3.961 5 C -0.140 4.140 6 C 0.085 3.915 7 H 0.084 0.916 8 C -0.124 4.124 9 C 0.186 3.814 10 N -0.626 5.626 11 C -0.250 4.250 12 H 0.079 0.921 13 C -0.065 4.065 14 N -0.951 5.951 15 Si 0.982 3.018 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.277 1.277 19 C 0.109 3.891 20 H 0.070 0.930 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.012 0.988 33 H 0.006 0.994 34 H 0.248 0.752 35 H 0.021 0.979 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.601 -3.111 2.644 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.243 5.243 4 C -0.089 4.089 5 C -0.197 4.197 6 C -0.025 4.025 7 H 0.102 0.898 8 C -0.162 4.162 9 C 0.061 3.939 10 N -0.353 5.353 11 C -0.378 4.378 12 H 0.097 0.903 13 C -0.258 4.258 14 N -0.600 5.600 15 Si 0.809 3.191 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.203 1.203 19 C -0.019 4.019 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.031 0.969 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.739 -2.782 2.319 15.177 hybrid contribution 2.019 -0.648 0.499 2.178 sum -12.720 -3.430 2.818 13.472 Atomic orbital electron populations 1.22000 0.93112 1.02010 1.03112 1.22193 0.97560 0.87989 1.00484 1.62387 1.21439 1.19914 1.20606 1.22308 0.98990 0.99282 0.88303 1.21955 0.94486 1.01874 1.01368 1.22780 0.86461 0.95955 0.97316 0.89754 1.22877 0.94703 0.96135 1.02465 1.20953 0.91000 0.86185 0.95754 1.44759 1.01182 1.16245 1.73086 1.19424 0.83164 1.00007 1.35249 0.90304 1.25698 1.01733 0.97168 1.01216 1.70188 1.28664 1.12647 1.48485 0.85115 0.78793 0.77211 0.77980 1.20163 1.21710 1.20297 1.22324 0.86954 0.95755 0.96824 0.91165 0.92182 0.91533 0.91752 0.94963 0.95487 0.91523 0.91542 0.91431 0.91772 0.90086 0.90606 0.96944 0.97540 0.94242 0.96141 0.95035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.42 71.98 0.68 -2.09 16 2 C 0.05 1.14 5.29 86.30 0.46 1.60 16 3 N -0.52 -15.15 4.48 -862.88 -3.86 -19.01 16 4 C 0.04 1.07 4.57 86.30 0.39 1.47 16 5 C -0.14 -2.87 8.66 71.98 0.62 -2.24 16 6 C 0.08 3.06 3.06 46.31 0.14 3.21 16 7 H 0.08 3.11 7.98 -2.39 -0.02 3.09 16 8 C -0.12 -4.79 6.42 31.78 0.20 -4.58 16 9 C 0.19 9.62 5.38 86.68 0.47 10.09 16 10 N -0.63 -33.80 3.40 -691.34 -2.35 -36.15 16 11 C -0.25 -14.58 10.28 84.03 0.86 -13.72 16 12 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 13 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 14 N -0.95 -58.77 10.34 21.65 0.22 -58.55 16 15 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 C 0.11 4.69 6.18 86.85 0.54 5.22 16 20 H 0.07 1.23 4.87 -2.39 -0.01 1.22 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.06 1.66 7.74 -2.39 -0.02 1.64 16 24 H 0.03 0.84 7.64 -2.39 -0.02 0.82 16 25 H 0.03 0.80 6.52 -2.38 -0.02 0.78 16 26 H 0.07 2.04 5.39 -2.39 -0.01 2.02 16 27 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 28 H 0.07 1.22 5.76 -2.39 -0.01 1.21 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.08 2.76 5.57 -2.38 -0.01 2.75 16 32 H 0.01 0.71 7.39 -2.39 -0.02 0.69 16 33 H 0.01 0.37 7.52 -2.39 -0.02 0.35 16 34 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.02 0.90 6.00 -2.39 -0.01 0.88 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.48 271.20 1.90 -63.58 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.04 Total: 5.79 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 4.83 Total: -4.41 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -5.99 Total: -113.71 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -65.48 1.90 -63.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062979861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.448 kcal (2) G-P(sol) polarization free energy of solvation -65.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds