Wall clock time and date at job start Sun Mar 29 2020 21:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 119.99821 * 2 1 4 4 H 1.08001 * 119.99737 * 202.31474 * 3 2 1 5 5 C 1.38816 * 120.00124 * 22.31920 * 3 2 1 6 6 N 1.31619 * 120.00006 * 13.89124 * 5 3 2 7 7 Si 1.86804 * 119.99725 * 193.89949 * 5 3 2 8 8 H 1.48499 * 109.47215 * 89.99994 * 7 5 3 9 9 H 1.48499 * 109.46766 * 209.99432 * 7 5 3 10 10 H 1.48495 * 109.46959 * 329.99814 * 7 5 3 11 11 C 1.46494 * 120.00186 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46722 * 90.00355 * 11 2 1 13 13 C 1.53121 * 109.52077 * 185.00252 * 12 11 2 14 14 C 1.53038 * 109.27708 * 182.44246 * 13 12 11 15 15 N 1.46849 * 109.52657 * 59.17891 * 14 13 12 16 16 C 1.46896 * 111.00029 * 174.16450 * 15 14 13 17 17 C 1.46848 * 111.19194 * 298.25751 * 15 14 13 18 18 C 1.53035 * 109.52416 * 61.74303 * 17 15 14 19 19 H 1.09001 * 109.47455 * 275.13125 * 1 2 3 20 20 H 1.08998 * 109.47376 * 35.13260 * 1 2 3 21 21 H 1.09008 * 109.47096 * 155.13412 * 1 2 3 22 22 H 0.96991 * 119.99781 * 179.97438 * 6 5 3 23 23 H 1.09002 * 109.47590 * 330.00794 * 11 2 1 24 24 H 1.09000 * 109.47411 * 210.00292 * 11 2 1 25 25 H 1.09004 * 109.57612 * 305.15597 * 12 11 2 26 26 H 1.09000 * 109.50574 * 62.50271 * 13 12 11 27 27 H 1.08996 * 109.53591 * 302.39660 * 13 12 11 28 28 H 1.09000 * 109.46413 * 299.16024 * 14 13 12 29 29 H 1.09004 * 109.46488 * 179.19287 * 14 13 12 30 30 H 1.09002 * 109.47702 * 59.99609 * 16 15 14 31 31 H 1.08997 * 109.46985 * 299.99607 * 16 15 14 32 32 H 1.09004 * 109.46977 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.45997 * 181.75668 * 17 15 14 34 34 H 1.09003 * 109.46602 * 301.72158 * 17 15 14 35 35 H 1.09008 * 109.50225 * 180.87434 * 18 17 15 36 36 H 1.08997 * 109.53806 * 60.78004 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1690 1.2209 -0.3551 5 6 1.5335 2.3431 0.4565 6 7 0.4091 2.2657 1.1363 7 14 2.3003 4.0100 0.1060 8 1 1.7762 4.5354 -1.1803 9 1 1.9583 4.9524 1.2015 10 1 3.7758 3.8675 0.0180 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7108 -1.4418 13 6 3.1066 -3.0953 -1.4445 14 6 3.4147 -3.5058 -2.8862 15 7 4.3146 -2.5184 -3.4960 16 6 4.7424 -2.9510 -4.8330 17 6 3.6892 -1.1907 -3.5475 18 6 3.3893 -0.7112 -2.1255 19 1 -0.3634 0.0919 1.0235 20 1 -0.3634 0.8404 -0.5914 21 1 -0.3634 -0.9325 -0.4322 22 1 -0.0212 3.0742 1.4555 23 1 1.6084 -2.0282 0.5146 24 1 3.1499 -1.1381 0.5144 25 1 1.5074 -1.7535 -1.9833 26 1 2.4263 -3.8201 -0.9973 27 1 4.0322 -3.0622 -0.8699 28 1 2.4871 -3.5528 -3.4566 29 1 3.8936 -4.4850 -2.8907 30 1 3.8684 -3.0698 -5.4735 31 1 5.2684 -3.9025 -4.7560 32 1 5.4075 -2.2014 -5.2620 33 1 4.3674 -0.4884 -4.0321 34 1 2.7603 -1.2485 -4.1148 35 1 2.9110 0.2676 -2.1648 36 1 4.3192 -0.6393 -1.5613 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063120753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:48 Heat of formation + Delta-G solvation = 15.647489 kcal Electronic energy + Delta-G solvation = -14922.343785 eV Core-core repulsion = 12634.709386 eV Total energy + Delta-G solvation = -2287.634400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.78282 -35.77787 -33.21077 -30.77346 -30.41361 -27.48777 -25.79346 -24.63972 -22.69873 -22.00993 -20.25141 -19.08334 -16.55291 -15.55594 -14.93228 -14.74171 -14.35905 -13.94816 -13.57324 -13.19535 -12.76279 -12.58804 -12.21256 -12.09622 -11.53392 -11.38044 -11.07693 -10.82497 -10.74931 -10.65541 -10.33634 -10.11717 -10.05587 -9.86553 -9.59452 -9.42428 -8.45589 -8.15398 -6.62963 -5.63849 -3.08700 3.42514 3.49041 3.50166 4.14405 4.56735 5.13653 5.21703 5.27821 5.39926 5.49543 5.56535 5.62330 5.77074 5.80746 5.85001 5.91732 6.01158 6.16158 6.26395 6.32466 6.47762 6.65400 6.71211 6.80144 6.87082 7.04115 7.14333 7.30001 7.35631 7.45846 7.80177 7.89366 8.48925 9.33028 9.97944 10.47505 11.41114 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040150 B = 0.008439 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.219475 B = 3317.063484 C = 3812.008654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.248 4.248 4 H 0.072 0.928 5 C -0.003 4.003 6 N -0.910 5.910 7 Si 0.900 3.100 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.157 3.843 12 C -0.106 4.106 13 C -0.111 4.111 14 C 0.059 3.941 15 N -0.544 5.544 16 C 0.026 3.974 17 C 0.055 3.945 18 C -0.104 4.104 19 H 0.029 0.971 20 H 0.038 0.962 21 H -0.005 1.005 22 H 0.250 0.750 23 H 0.032 0.968 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.088 0.912 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.089 -9.661 -8.396 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.377 4.377 4 H 0.090 0.910 5 C -0.200 4.200 6 N -0.555 5.555 7 Si 0.730 3.270 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.030 3.970 12 C -0.128 4.128 13 C -0.149 4.149 14 C -0.069 4.069 15 N -0.269 5.269 16 C -0.123 4.123 17 C -0.072 4.072 18 C -0.141 4.141 19 H 0.047 0.953 20 H 0.057 0.943 21 H 0.014 0.986 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.106 0.894 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.387 -9.476 -8.007 13.525 hybrid contribution -0.425 0.897 -0.776 1.260 sum 4.962 -8.579 -8.783 13.242 Atomic orbital electron populations 1.20752 0.82955 0.95147 0.99256 1.43889 1.01668 1.00798 1.86162 1.19265 0.97879 0.85394 1.35187 0.91024 1.25013 0.98061 0.98389 0.98565 1.70078 1.19707 1.26834 1.38915 0.86313 0.78776 0.84500 0.77376 1.21670 1.21882 1.20459 1.20757 0.95845 0.88130 0.92263 1.21857 0.97511 0.93049 1.00361 1.21620 1.00757 0.97582 0.94975 1.22067 0.94016 0.94713 0.96062 1.61964 1.41452 1.03075 1.20387 1.22329 0.99283 1.01000 0.89664 1.22206 0.96571 0.89463 0.98968 1.21630 0.99436 1.00144 0.92910 0.95309 0.94283 0.98623 0.93935 0.94939 0.93591 0.92576 0.92160 0.91441 0.95468 0.91594 0.96187 0.91821 0.91685 0.91491 0.95507 0.89358 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 8.98 59.85 0.54 4.67 16 2 N -0.60 -15.28 2.81 -181.12 -0.51 -15.79 16 3 C -0.25 -6.78 8.21 -15.06 -0.12 -6.90 16 4 H 0.07 1.91 6.77 -52.49 -0.36 1.55 16 5 C 0.00 -0.07 5.08 -17.43 -0.09 -0.16 16 6 N -0.91 -27.02 10.72 55.49 0.59 -26.42 16 7 Si 0.90 22.12 29.58 -169.99 -5.03 17.10 16 8 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.16 3.30 5.15 -4.04 -0.02 3.28 16 12 C -0.11 -1.91 2.46 -90.50 -0.22 -2.14 16 13 C -0.11 -1.65 5.38 -26.65 -0.14 -1.79 16 14 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 15 N -0.54 -7.83 4.91 -242.96 -1.19 -9.02 16 16 C 0.03 0.30 9.59 60.06 0.58 0.87 16 17 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 18 C -0.10 -1.88 4.48 -26.65 -0.12 -2.00 16 19 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 20 H 0.04 1.05 7.32 -51.93 -0.38 0.67 16 21 H 0.00 -0.11 8.03 -51.92 -0.42 -0.52 16 22 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 24 H 0.05 0.98 8.04 -51.93 -0.42 0.57 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.85 6.28 -51.92 -0.33 1.52 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 279.21 15.07 4.21 4.21 Total: -1.00 -29.41 279.21 -8.05 -37.46 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -6.48 Total: -5.00 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 0.35 Total: -2.54 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -1.11 Total: -51.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.41 -8.05 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063120753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.112 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds