Wall clock time and date at job start Sun Mar 29 2020 21:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 119.99821 * 2 1 4 4 H 1.08001 * 119.99737 * 202.31474 * 3 2 1 5 5 C 1.38816 * 120.00124 * 22.31920 * 3 2 1 6 6 N 1.31619 * 120.00006 * 13.89124 * 5 3 2 7 7 Si 1.86804 * 119.99725 * 193.89949 * 5 3 2 8 8 H 1.48499 * 109.47215 * 89.99994 * 7 5 3 9 9 H 1.48499 * 109.46766 * 209.99432 * 7 5 3 10 10 H 1.48495 * 109.46959 * 329.99814 * 7 5 3 11 11 C 1.46494 * 120.00186 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46722 * 90.00355 * 11 2 1 13 13 C 1.53121 * 109.52077 * 185.00252 * 12 11 2 14 14 C 1.53038 * 109.27708 * 182.44246 * 13 12 11 15 15 N 1.46849 * 109.52657 * 59.17891 * 14 13 12 16 16 C 1.46896 * 111.00029 * 174.16450 * 15 14 13 17 17 C 1.46848 * 111.19194 * 298.25751 * 15 14 13 18 18 C 1.53035 * 109.52416 * 61.74303 * 17 15 14 19 19 H 1.09001 * 109.47455 * 275.13125 * 1 2 3 20 20 H 1.08998 * 109.47376 * 35.13260 * 1 2 3 21 21 H 1.09008 * 109.47096 * 155.13412 * 1 2 3 22 22 H 0.96991 * 119.99781 * 179.97438 * 6 5 3 23 23 H 1.09002 * 109.47590 * 330.00794 * 11 2 1 24 24 H 1.09000 * 109.47411 * 210.00292 * 11 2 1 25 25 H 1.09004 * 109.57612 * 305.15597 * 12 11 2 26 26 H 1.09000 * 109.50574 * 62.50271 * 13 12 11 27 27 H 1.08996 * 109.53591 * 302.39660 * 13 12 11 28 28 H 1.09000 * 109.46413 * 299.16024 * 14 13 12 29 29 H 1.09004 * 109.46488 * 179.19287 * 14 13 12 30 30 H 1.09002 * 109.47702 * 59.99609 * 16 15 14 31 31 H 1.08997 * 109.46985 * 299.99607 * 16 15 14 32 32 H 1.09004 * 109.46977 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.45997 * 181.75668 * 17 15 14 34 34 H 1.09003 * 109.46602 * 301.72158 * 17 15 14 35 35 H 1.09008 * 109.50225 * 180.87434 * 18 17 15 36 36 H 1.08997 * 109.53806 * 60.78004 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1690 1.2209 -0.3551 5 6 1.5335 2.3431 0.4565 6 7 0.4091 2.2657 1.1363 7 14 2.3003 4.0100 0.1060 8 1 1.7762 4.5354 -1.1803 9 1 1.9583 4.9524 1.2015 10 1 3.7758 3.8675 0.0180 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7108 -1.4418 13 6 3.1066 -3.0953 -1.4445 14 6 3.4147 -3.5058 -2.8862 15 7 4.3146 -2.5184 -3.4960 16 6 4.7424 -2.9510 -4.8330 17 6 3.6892 -1.1907 -3.5475 18 6 3.3893 -0.7112 -2.1255 19 1 -0.3634 0.0919 1.0235 20 1 -0.3634 0.8404 -0.5914 21 1 -0.3634 -0.9325 -0.4322 22 1 -0.0212 3.0742 1.4555 23 1 1.6084 -2.0282 0.5146 24 1 3.1499 -1.1381 0.5144 25 1 1.5074 -1.7535 -1.9833 26 1 2.4263 -3.8201 -0.9973 27 1 4.0322 -3.0622 -0.8699 28 1 2.4871 -3.5528 -3.4566 29 1 3.8936 -4.4850 -2.8907 30 1 3.8684 -3.0698 -5.4735 31 1 5.2684 -3.9025 -4.7560 32 1 5.4075 -2.2014 -5.2620 33 1 4.3674 -0.4884 -4.0321 34 1 2.7603 -1.2485 -4.1148 35 1 2.9110 0.2676 -2.1648 36 1 4.3192 -0.6393 -1.5613 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063120753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:48 Heat of formation + Delta-G solvation = -2.831289 kcal Electronic energy + Delta-G solvation = -14923.145085 eV Core-core repulsion = 12634.709386 eV Total energy + Delta-G solvation = -2288.435700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06673 -37.53078 -34.79749 -32.68125 -31.68768 -28.92870 -27.88568 -26.05449 -24.01550 -23.54003 -21.87852 -20.47558 -18.61877 -16.97561 -16.63156 -15.94970 -15.68483 -15.43356 -15.28095 -14.87436 -14.40903 -14.04586 -13.68671 -13.23159 -13.01152 -12.90738 -12.80681 -12.61458 -12.34997 -12.19023 -12.03756 -11.97035 -11.81944 -11.54308 -11.10960 -10.97393 -10.57418 -9.24445 -8.70267 -7.77944 -5.24833 1.46546 1.47432 1.56156 2.53579 3.07309 3.34332 3.71174 3.98512 4.01999 4.14705 4.32411 4.45373 4.55119 4.60446 4.68601 4.74017 4.82006 4.84890 4.91917 4.97768 5.02476 5.08398 5.16628 5.19937 5.31798 5.39652 5.57042 5.66486 5.69014 5.73382 6.17410 6.23675 6.37863 7.20020 7.93358 8.37723 9.25595 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040150 B = 0.008439 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.219475 B = 3317.063484 C = 3812.008654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.618 5.618 3 C -0.246 4.246 4 H 0.075 0.925 5 C -0.061 4.061 6 N -0.943 5.943 7 Si 0.962 3.038 8 H -0.288 1.288 9 H -0.297 1.297 10 H -0.267 1.267 11 C 0.155 3.845 12 C -0.096 4.096 13 C -0.104 4.104 14 C 0.061 3.939 15 N -0.556 5.556 16 C 0.026 3.974 17 C 0.064 3.936 18 C -0.098 4.098 19 H 0.003 0.997 20 H 0.012 0.988 21 H 0.027 0.973 22 H 0.245 0.755 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.090 0.910 30 H 0.024 0.976 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.054 0.946 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -11.057 -9.655 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.341 5.341 3 C -0.376 4.376 4 H 0.093 0.907 5 C -0.255 4.255 6 N -0.591 5.591 7 Si 0.791 3.209 8 H -0.215 1.215 9 H -0.224 1.224 10 H -0.192 1.192 11 C 0.030 3.970 12 C -0.117 4.117 13 C -0.143 4.143 14 C -0.067 4.067 15 N -0.281 5.281 16 C -0.122 4.122 17 C -0.064 4.064 18 C -0.136 4.136 19 H 0.021 0.979 20 H 0.031 0.969 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.689 -10.910 -9.288 15.812 hybrid contribution -0.793 1.247 -0.391 1.528 sum 5.896 -9.663 -9.679 14.893 Atomic orbital electron populations 1.20491 0.83218 0.95580 0.97417 1.44140 1.01867 1.01880 1.86211 1.19565 0.98003 0.86341 1.33704 0.90700 1.25764 0.98886 1.01717 0.99126 1.70242 1.21206 1.27171 1.40519 0.85324 0.78541 0.80304 0.76738 1.21539 1.22382 1.19184 1.20934 0.95105 0.86600 0.94410 1.21653 0.97357 0.95047 0.97637 1.21561 1.00678 0.95613 0.96410 1.22091 0.94292 0.95544 0.94775 1.61958 1.41301 1.02515 1.22309 1.22399 0.99665 1.02028 0.88133 1.22038 0.96822 0.90772 0.96809 1.21478 0.98566 0.98728 0.94854 0.97900 0.96872 0.95457 0.94548 0.93756 0.94287 0.93596 0.90487 0.91577 0.95470 0.89134 0.95746 0.90065 0.91047 0.90690 0.95850 0.92691 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.10 8.98 127.77 1.15 10.25 16 2 N -0.62 -31.51 2.81 -726.93 -2.04 -33.56 16 3 C -0.25 -13.58 8.21 84.03 0.69 -12.89 16 4 H 0.08 4.01 6.77 -2.91 -0.02 3.99 16 5 C -0.06 -3.48 5.08 84.86 0.43 -3.05 16 6 N -0.94 -57.35 10.72 21.65 0.23 -57.12 16 7 Si 0.96 46.06 29.58 68.60 2.03 48.08 16 8 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 9 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 C 0.16 6.40 5.15 86.38 0.44 6.85 16 12 C -0.10 -3.33 2.46 -10.71 -0.03 -3.35 16 13 C -0.10 -2.82 5.38 30.65 0.16 -2.66 16 14 C 0.06 1.46 5.46 86.33 0.47 1.93 16 15 N -0.56 -14.40 4.91 -922.58 -4.53 -18.93 16 16 C 0.03 0.50 9.59 127.69 1.22 1.73 16 17 C 0.06 1.87 5.46 86.32 0.47 2.34 16 18 C -0.10 -3.51 4.48 30.64 0.14 -3.38 16 19 H 0.00 0.15 7.35 -2.39 -0.02 0.14 16 20 H 0.01 0.70 7.32 -2.39 -0.02 0.68 16 21 H 0.03 1.19 8.03 -2.38 -0.02 1.17 16 22 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 23 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 24 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 1.78 8.12 -2.38 -0.02 1.76 16 30 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 33 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 2.32 6.28 -2.38 -0.01 2.30 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -62.84 279.21 1.85 -60.99 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.01 Total: 2.76 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.16 Total: -2.23 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -6.34 Total: -109.60 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -62.84 1.85 -60.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063120753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.158 kcal (2) G-P(sol) polarization free energy of solvation -62.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds