Wall clock time and date at job start Sun Mar 29 2020 21:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00229 * 2 1 4 4 H 1.48494 * 109.46884 * 269.99828 * 3 2 1 5 5 H 1.48506 * 109.46911 * 30.00097 * 3 2 1 6 6 H 1.48507 * 109.47124 * 149.99673 * 3 2 1 7 7 C 1.37882 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99808 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99995 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47071 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47148 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47302 * 179.97438 * 11 10 9 13 13 C 1.36317 * 121.38206 * 269.97749 * 12 11 10 14 14 C 1.32563 * 116.71190 * 179.97438 * 13 12 11 15 15 S 1.77229 * 105.31737 * 359.97438 * 14 13 12 16 16 C 1.34242 * 121.38490 * 89.97450 * 12 11 10 17 17 O 1.21827 * 127.05191 * 359.97438 * 16 12 11 18 18 H 0.97005 * 119.99484 * 359.97438 * 1 2 3 19 19 H 1.08990 * 109.47156 * 59.99980 * 9 7 2 20 20 H 1.09003 * 109.46864 * 300.00040 * 9 7 2 21 21 H 1.09004 * 109.47297 * 59.99590 * 10 9 7 22 22 H 1.09003 * 109.47017 * 299.99588 * 10 9 7 23 23 H 1.09004 * 109.47112 * 59.99776 * 11 10 9 24 24 H 1.08998 * 109.47338 * 299.99462 * 11 10 9 25 25 H 1.08003 * 121.64242 * 0.02562 * 13 12 11 26 26 H 1.08000 * 127.33538 * 180.26215 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5514 -2.6367 0.0009 12 7 6.0398 -4.0179 0.0014 13 6 6.2769 -4.6866 1.1654 14 6 6.7167 -5.9325 1.0580 15 16 6.8240 -6.2425 -0.6837 16 6 6.2723 -4.6776 -1.1443 17 8 6.1221 -4.2562 -2.2775 18 1 -0.4849 0.8401 0.0004 19 1 3.8745 -0.6801 0.8910 20 1 3.8752 -0.6805 -0.8889 21 1 3.6584 -3.1503 -0.8892 22 1 3.6578 -3.1506 0.8908 23 1 5.9148 -2.1229 0.8910 24 1 5.9148 -2.1229 -0.8890 25 1 6.1136 -4.2243 2.1278 26 1 6.9542 -6.6148 1.8607 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070914480.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:56 Heat of formation + Delta-G solvation = -35.707106 kcal Electronic energy + Delta-G solvation = -11733.723716 eV Core-core repulsion = 9517.230434 eV Total energy + Delta-G solvation = -2216.493282 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.76852 -38.42864 -36.25877 -34.25780 -31.85124 -29.20076 -26.37867 -24.32027 -22.27532 -21.48218 -19.61086 -19.00741 -17.93297 -17.05021 -16.36492 -16.00891 -15.85750 -15.23322 -14.91873 -14.65005 -14.23820 -13.45842 -13.36845 -12.80410 -12.64414 -12.13432 -11.97109 -11.82678 -11.62565 -11.42815 -11.10190 -10.79121 -10.47500 -9.00827 -8.31447 -6.37209 -0.07903 0.45926 0.93032 1.26803 1.37052 1.38824 1.50370 1.91866 2.35363 3.04119 3.79228 3.94373 4.08253 4.39157 4.45643 4.61682 4.72746 4.82405 4.94069 5.23935 5.39168 5.46187 5.61834 5.80274 6.23194 6.32605 6.70743 7.27493 8.85630 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.060728 B = 0.006349 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.962105 B = 4408.747937 C = 4441.665204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.233 1.233 7 C -0.538 4.538 8 H 0.025 0.975 9 C -0.007 4.007 10 C -0.105 4.105 11 C 0.107 3.893 12 N -0.534 5.534 13 C 0.064 3.936 14 C -0.217 4.217 15 S -0.010 6.010 16 C 0.453 3.547 17 O -0.530 6.530 18 H 0.267 0.733 19 H 0.042 0.958 20 H 0.016 0.984 21 H 0.026 0.974 22 H 0.066 0.934 23 H 0.131 0.869 24 H 0.079 0.921 25 H 0.220 0.780 26 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.437 -9.023 6.596 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.156 1.156 7 C -0.576 4.576 8 H 0.043 0.957 9 C -0.045 4.045 10 C -0.144 4.144 11 C -0.017 4.017 12 N -0.253 5.253 13 C -0.064 4.064 14 C -0.354 4.354 15 S 0.231 5.769 16 C 0.137 3.863 17 O -0.414 6.414 18 H 0.076 0.924 19 H 0.060 0.940 20 H 0.035 0.965 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.148 0.852 24 H 0.097 0.903 25 H 0.237 0.763 26 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 17.575 -9.695 5.189 20.732 hybrid contribution -0.984 1.755 0.225 2.024 sum 16.591 -7.941 5.414 19.173 Atomic orbital electron populations 1.70085 1.08544 1.28308 1.52437 1.26112 0.95688 1.03884 0.93878 0.85581 0.79913 0.77599 0.79067 1.19833 1.20915 1.15606 1.21460 0.92267 0.92963 1.50894 0.95697 1.19450 0.93845 0.93851 0.97390 1.21624 0.93576 0.98430 1.00747 1.22060 0.94416 0.79534 1.05701 1.46412 1.57081 1.16066 1.05784 1.21574 0.99407 0.94103 0.91276 1.25704 1.14068 0.99452 0.96217 1.85024 1.72045 1.13777 1.06061 1.22167 0.84281 0.92768 0.87116 1.90921 1.57776 1.72166 1.20566 0.92438 0.94006 0.96527 0.95529 0.91529 0.85152 0.90299 0.76339 0.75009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.39 13.96 21.45 0.30 -60.09 15 2 C 0.00 0.06 5.47 84.66 0.46 0.52 15 3 Si 0.96 43.48 27.47 68.60 1.88 45.37 15 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.23 -9.33 6.54 99.48 0.65 -8.68 15 7 C -0.54 -31.23 9.66 25.60 0.25 -30.98 15 8 H 0.02 1.61 7.99 -2.91 -0.02 1.59 15 9 C -0.01 -0.33 4.04 29.85 0.12 -0.21 15 10 C -0.11 -4.01 5.48 30.59 0.17 -3.84 15 11 C 0.11 3.05 5.61 86.38 0.48 3.54 15 12 N -0.53 -14.20 2.60 -658.12 -1.71 -15.92 15 13 C 0.06 1.08 10.51 82.85 0.87 1.95 15 14 C -0.22 -3.14 11.55 66.67 0.77 -2.37 15 15 S -0.01 -0.23 22.97 -56.49 -1.30 -1.53 15 16 C 0.45 14.69 8.27 129.87 1.07 15.77 15 17 O -0.53 -21.97 17.55 -4.76 -0.08 -22.05 15 18 H 0.27 15.70 8.31 -92.70 -0.77 14.93 15 19 H 0.04 1.71 7.20 -2.39 -0.02 1.69 15 20 H 0.02 0.74 7.57 -2.39 -0.02 0.72 15 21 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.13 2.66 8.07 -2.39 -0.02 2.64 15 24 H 0.08 2.47 7.80 -2.39 -0.02 2.45 15 25 H 0.22 1.97 8.06 -2.91 -0.02 1.94 15 26 H 0.23 1.31 8.06 -2.91 -0.02 1.29 15 Total: -1.00 -75.57 245.24 4.40 -71.17 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: 1.11 Total: -1.33 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.20 Total: -15.62 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -1.41 Total: -76.01 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.08 Total: -22.05 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -1.30 Total: -1.53 kcal Total: -75.57 4.40 -71.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070914480.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.459 kcal (2) G-P(sol) polarization free energy of solvation -75.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds