Wall clock time and date at job start Sun Mar 29 2020 22:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00094 * 2 1 4 4 H 1.48504 * 109.47107 * 265.18091 * 3 2 1 5 5 H 1.48500 * 109.47014 * 25.17545 * 3 2 1 6 6 H 1.48494 * 109.47316 * 145.18001 * 3 2 1 7 7 C 1.38816 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99580 * 348.00732 * 7 2 1 9 9 N 1.36937 * 120.00011 * 168.00493 * 7 2 1 10 10 C 1.47598 * 118.64615 * 323.22063 * 9 7 2 11 11 C 1.53895 * 112.16876 * 222.13950 * 10 9 7 12 12 C 1.50879 * 110.09780 * 40.54839 * 11 10 9 13 13 C 1.52571 * 109.38023 * 268.14140 * 12 11 10 14 14 C 1.47093 * 114.32787 * 84.99910 * 13 12 11 15 15 C 1.44581 * 118.64095 * 143.23416 * 9 7 2 16 16 H 1.08997 * 109.45402 * 209.31786 * 15 9 7 17 17 C 1.50700 * 109.45357 * 329.24137 * 15 9 7 18 18 O 1.20828 * 119.99925 * 38.59734 * 17 15 9 19 19 O 1.34226 * 120.00340 * 218.59878 * 17 15 9 20 20 H 0.97001 * 120.00342 * 0.02562 * 1 2 3 21 21 H 1.09002 * 108.94684 * 342.81188 * 10 9 7 22 22 H 1.08999 * 108.94856 * 101.53111 * 10 9 7 23 23 H 1.09007 * 109.35027 * 280.36674 * 11 10 9 24 24 H 1.09000 * 109.37410 * 160.75087 * 11 10 9 25 25 H 1.09000 * 109.48729 * 148.16346 * 12 11 10 26 26 H 1.09001 * 109.49055 * 28.11576 * 12 11 10 27 27 H 1.08998 * 108.51416 * 206.25765 * 13 12 11 28 28 H 1.09007 * 108.51061 * 323.90809 * 13 12 11 29 29 H 1.09006 * 109.32433 * 57.46029 * 14 13 12 30 30 H 1.08998 * 109.32896 * 177.10856 * 14 13 12 31 31 H 0.96699 * 117.00180 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5995 1.9876 -1.3952 5 1 1.4003 2.6799 0.5956 6 1 3.4930 1.4718 0.7994 7 6 2.0102 -1.2022 0.0005 8 1 1.4879 -2.1271 0.1953 9 7 3.3572 -1.2152 -0.2459 10 6 3.9038 -0.2711 -1.2401 11 6 4.9571 -0.9297 -2.1485 12 6 4.5194 -2.3241 -2.5235 13 6 5.0842 -3.3203 -1.5153 14 6 4.2656 -3.4872 -0.3046 15 6 4.1851 -2.1535 0.4783 16 1 5.1868 -1.7396 0.5941 17 6 3.5866 -2.4054 1.8382 18 8 2.3878 -2.4873 1.9649 19 8 4.3852 -2.5387 2.9088 20 1 -0.4851 0.8400 -0.0004 21 1 3.0880 0.1032 -1.8586 22 1 4.3640 0.5669 -0.7167 23 1 5.9093 -0.9795 -1.6202 24 1 5.0783 -0.3334 -3.0528 25 1 4.8893 -2.5657 -3.5199 26 1 3.4307 -2.3777 -2.5168 27 1 5.1812 -4.2898 -2.0039 28 1 6.0769 -2.9842 -1.2155 29 1 3.2608 -3.8000 -0.5888 30 1 4.7143 -4.2498 0.3319 31 1 3.9552 -2.6988 3.7600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080991740.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:30 Heat of formation + Delta-G solvation = -66.768434 kcal Electronic energy + Delta-G solvation = -15427.710337 eV Core-core repulsion = 12902.950358 eV Total energy + Delta-G solvation = -2524.759979 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67688 -37.69575 -35.24629 -33.70553 -32.10463 -31.25769 -26.85155 -25.32676 -23.12410 -21.91950 -19.91252 -19.21909 -17.50090 -16.86324 -15.46019 -15.25631 -14.67975 -14.34021 -14.13887 -13.97474 -13.00151 -12.73949 -12.54413 -12.00557 -11.85613 -11.54331 -11.25574 -10.82063 -10.71232 -10.46140 -10.18663 -10.17699 -9.94056 -9.87059 -9.53342 -8.91686 -8.46549 -6.87793 -5.86110 -3.35104 3.16188 3.32729 3.47322 3.48494 3.76683 4.54886 4.90685 5.20536 5.28745 5.46924 5.51530 5.68906 5.77221 5.93395 6.12422 6.15865 6.28467 6.35748 6.38941 6.47186 6.57833 6.66019 6.77153 6.83557 6.98456 7.30891 8.08222 8.45189 8.90715 9.06693 9.75444 10.00838 11.28547 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.017534 C = 0.012605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.694050 B = 1596.518670 C = 2220.869663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.304 1.304 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.105 0.895 9 N -0.591 5.591 10 C 0.131 3.869 11 C -0.134 4.134 12 C -0.112 4.112 13 C -0.103 4.103 14 C -0.129 4.129 15 C 0.201 3.799 16 H 0.068 0.932 17 C 0.450 3.550 18 O -0.463 6.463 19 O -0.538 6.538 20 H 0.262 0.738 21 H 0.076 0.924 22 H 0.021 0.979 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.356 -4.235 -1.286 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.168 4.168 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.232 1.232 6 H -0.202 1.202 7 C -0.383 4.383 8 H 0.122 0.878 9 N -0.315 5.315 10 C 0.007 3.993 11 C -0.172 4.172 12 C -0.149 4.149 13 C -0.140 4.140 14 C -0.169 4.169 15 C 0.091 3.909 16 H 0.086 0.914 17 C 0.289 3.711 18 O -0.344 6.344 19 O -0.351 6.351 20 H 0.072 0.928 21 H 0.094 0.906 22 H 0.039 0.961 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 11.035 -4.067 -1.635 11.874 hybrid contribution 0.131 1.057 0.712 1.281 sum 11.166 -3.010 -0.923 11.601 Atomic orbital electron populations 1.69749 1.05702 1.26262 1.53122 1.25494 0.95220 0.97326 0.98731 0.87051 0.79185 0.84842 0.77590 1.21150 1.23213 1.20218 1.19247 0.81035 0.95027 1.42974 0.87782 1.43998 1.05057 1.41357 1.41097 1.21688 0.96168 0.91101 0.90383 1.21877 0.98930 0.97137 0.99305 1.20997 1.02907 0.94160 0.96851 1.20302 0.98814 0.98953 0.95947 1.21324 1.01654 0.96998 0.96955 1.19793 0.94403 0.92422 0.84256 0.91408 1.24152 0.85983 0.74354 0.86632 1.90785 1.15990 1.42167 1.85478 1.84592 1.45575 1.85315 1.19588 0.92842 0.90600 0.96093 0.92754 0.92228 0.93230 0.90134 0.93062 0.93045 0.90722 0.92566 0.74953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.51 13.97 55.49 0.78 -27.73 16 2 C 0.03 0.93 5.27 -17.43 -0.09 0.84 16 3 Si 0.88 22.77 24.03 -169.99 -4.08 18.68 16 4 H -0.28 -6.91 6.63 56.52 0.37 -6.54 16 5 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 6 H -0.28 -7.07 6.66 56.52 0.38 -6.69 16 7 C -0.25 -7.17 7.59 -15.06 -0.11 -7.28 16 8 H 0.10 3.28 6.59 -52.49 -0.35 2.93 16 9 N -0.59 -13.85 1.90 -165.83 -0.31 -14.16 16 10 C 0.13 2.77 3.99 -2.97 -0.01 2.75 16 11 C -0.13 -2.19 5.71 -27.33 -0.16 -2.35 16 12 C -0.11 -1.77 5.50 -28.02 -0.15 -1.92 16 13 C -0.10 -1.52 5.16 -29.79 -0.15 -1.67 16 14 C -0.13 -2.21 5.05 -28.58 -0.14 -2.36 16 15 C 0.20 4.05 2.54 -69.12 -0.18 3.87 16 16 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 17 C 0.45 9.57 7.26 36.01 0.26 9.83 16 18 O -0.46 -11.76 14.06 -18.75 -0.26 -12.03 16 19 O -0.54 -9.14 13.42 -39.25 -0.53 -9.67 16 20 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 21 H 0.08 1.74 5.81 -51.93 -0.30 1.44 16 22 H 0.02 0.46 5.76 -51.93 -0.30 0.16 16 23 H 0.05 0.82 7.32 -51.93 -0.38 0.44 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.70 7.35 -51.92 -0.38 0.32 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.39 4.98 9.10 45.56 0.41 5.40 16 LS Contribution 242.30 15.07 3.65 3.65 Total: -1.00 -32.98 242.30 -4.90 -37.88 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.40 Total: 1.66 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.74 Total: 1.71 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.46 Total: -41.90 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.79 Total: -21.69 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.08 Total: 18.68 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.98 -4.90 -37.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080991740.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.884 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds