Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86805 * 119.99742 * 2 1 4 4 H 1.48495 * 109.47071 * 270.00359 * 3 2 1 5 5 H 1.48502 * 109.46903 * 30.00158 * 3 2 1 6 6 H 1.48498 * 109.47126 * 149.99928 * 3 2 1 7 7 C 1.40049 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99641 * 179.97438 * 7 2 1 9 9 C 1.46366 * 119.99806 * 0.02562 * 7 2 1 10 10 O 1.21693 * 120.00324 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99982 * 179.97438 * 9 7 2 12 12 C 1.46502 * 119.99995 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46971 * 185.86212 * 12 11 9 14 14 C 1.53001 * 112.84582 * 294.19437 * 13 12 11 15 15 O 1.42897 * 109.46986 * 305.83561 * 14 13 12 16 16 C 1.53779 * 113.61552 * 65.38669 * 13 12 11 17 17 C 1.53785 * 87.07978 * 89.11652 * 16 13 12 18 18 C 1.53783 * 87.17019 * 25.38959 * 17 16 13 19 19 H 0.96997 * 120.00751 * 359.97438 * 1 2 3 20 20 H 0.96992 * 119.99959 * 359.97438 * 11 9 7 21 21 H 1.09001 * 109.47119 * 65.85855 * 12 11 9 22 22 H 1.09006 * 109.46783 * 305.86004 * 12 11 9 23 23 H 1.08996 * 109.47316 * 65.83804 * 14 13 12 24 24 H 1.09001 * 109.46526 * 185.84242 * 14 13 12 25 25 H 0.96703 * 114.00216 * 180.02562 * 15 14 13 26 26 H 1.09003 * 113.61189 * 334.57234 * 16 13 12 27 27 H 1.09000 * 113.61614 * 203.66792 * 16 13 12 28 28 H 1.09004 * 113.61216 * 139.98014 * 17 16 13 29 29 H 1.09000 * 113.61464 * 270.80025 * 17 16 13 30 30 H 1.08998 * 113.61354 * 89.16093 * 18 17 16 31 31 H 1.08998 * 113.61427 * 220.05772 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4000 5 1 1.4380 2.6527 0.7001 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0001 9 6 1.2752 -2.4804 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9492 -3.6476 0.0005 12 6 1.2167 -4.9164 0.0011 13 6 2.2045 -6.0755 0.1483 14 6 3.1397 -6.2154 -1.0545 15 8 2.3650 -6.3123 -2.2514 16 6 2.9346 -6.0946 1.5016 17 6 1.7703 -6.9499 2.0286 18 6 1.5417 -7.3977 0.5753 19 1 -0.4851 0.8400 0.0004 20 1 2.9191 -3.6476 0.0002 21 1 0.6707 -5.0211 -0.9364 22 1 0.5140 -4.9298 0.8343 23 1 3.7903 -5.3429 -1.1124 24 1 3.7461 -7.1140 -0.9406 25 1 2.8937 -6.4039 -3.0559 26 1 3.0050 -5.1146 1.9736 27 1 3.8878 -6.6227 1.4761 28 1 2.0858 -7.7571 2.6898 29 1 0.9484 -6.3632 2.4392 30 1 2.1133 -8.2828 0.2962 31 1 0.4892 -7.4683 0.3006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082275126.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = -107.733808 kcal Electronic energy + Delta-G solvation = -14476.071087 eV Core-core repulsion = 11949.534717 eV Total energy + Delta-G solvation = -2526.536371 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.92153 -38.94113 -37.04867 -34.94650 -34.23242 -29.97374 -28.54025 -26.83135 -26.27308 -23.11959 -21.73243 -19.83068 -18.73703 -18.21109 -17.46913 -16.85389 -16.22044 -15.96884 -15.52602 -15.24844 -14.91517 -14.32067 -13.81916 -13.53040 -13.19642 -13.13215 -12.78218 -12.69584 -12.57804 -12.35210 -12.01951 -11.39799 -11.20053 -11.15840 -10.93598 -10.72325 -9.88114 -9.45108 -8.29380 -6.86495 1.39338 1.41761 1.57078 2.24492 2.47073 3.00998 3.41815 3.58969 3.65017 3.70604 3.93679 4.07580 4.21916 4.48020 4.64371 4.68712 4.82755 4.84044 4.92665 4.98692 5.08040 5.21090 5.30798 5.37864 5.55155 5.86770 6.23409 6.27663 6.85645 6.98520 7.56299 8.49538 8.67629 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044309 B = 0.007449 C = 0.007241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.774758 B = 3758.229875 C = 3865.678012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.025 3.975 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.637 6.637 11 N -0.746 5.746 12 C 0.168 3.832 13 C -0.099 4.099 14 C 0.095 3.905 15 O -0.592 6.592 16 C -0.121 4.121 17 C -0.139 4.139 18 C -0.115 4.115 19 H 0.274 0.726 20 H 0.392 0.608 21 H 0.023 0.977 22 H 0.025 0.975 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.392 0.608 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.054 -11.913 0.557 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.610 4.610 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.525 6.525 11 N -0.400 5.400 12 C 0.043 3.957 13 C -0.100 4.100 14 C 0.018 3.982 15 O -0.399 6.399 16 C -0.158 4.158 17 C -0.176 4.176 18 C -0.153 4.153 19 H 0.084 0.916 20 H 0.226 0.774 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.242 0.758 26 H 0.074 0.926 27 H 0.133 0.867 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.516 -11.806 0.984 15.196 hybrid contribution 0.544 0.801 -0.507 1.093 sum 10.060 -11.005 0.477 14.918 Atomic orbital electron populations 1.70207 1.09684 1.28957 1.36549 1.27053 0.95553 1.05159 0.91164 0.84971 0.78756 0.74774 0.79452 1.18568 1.19763 1.16989 1.21424 0.94714 0.89994 1.54818 0.89325 1.18686 0.86834 0.84494 0.76046 1.90546 1.16471 1.88075 1.57428 1.45671 1.08994 1.04493 1.80846 1.20464 0.93732 0.83483 0.97987 1.22153 0.96951 0.95432 0.95449 1.22159 0.92012 1.00486 0.83588 1.86514 1.38834 1.96964 1.17629 1.22956 0.98900 1.00637 0.93356 1.22787 0.98160 0.99945 0.96753 1.22933 1.00666 0.95942 0.95747 0.91578 0.77388 0.95904 0.95685 0.93844 0.90263 0.75842 0.92606 0.86677 0.88732 0.92363 0.87174 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.22 11.83 21.84 0.26 -51.96 16 2 C 0.03 1.46 5.50 85.30 0.47 1.93 16 3 Si 1.00 41.74 29.56 68.60 2.03 43.77 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 7 C -0.57 -33.55 9.54 24.83 0.24 -33.31 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 9 C 0.54 32.78 7.75 86.36 0.67 33.45 16 10 O -0.64 -45.35 15.01 -4.33 -0.06 -45.42 16 11 N -0.75 -35.74 5.17 -467.38 -2.42 -38.15 16 12 C 0.17 7.29 4.79 86.38 0.41 7.70 16 13 C -0.10 -2.93 0.68 -51.60 -0.04 -2.97 16 14 C 0.09 2.35 6.26 71.98 0.45 2.80 16 15 O -0.59 -16.69 12.92 -148.98 -1.93 -18.61 16 16 C -0.12 -2.97 7.12 31.12 0.22 -2.75 16 17 C -0.14 -3.33 7.72 31.12 0.24 -3.09 16 18 C -0.12 -2.85 7.24 31.18 0.23 -2.62 16 19 H 0.27 15.68 8.29 -92.71 -0.77 14.91 16 20 H 0.39 16.12 7.73 -92.71 -0.72 15.40 16 21 H 0.02 1.12 7.61 -2.39 -0.02 1.10 16 22 H 0.02 1.19 7.30 -2.38 -0.02 1.17 16 23 H 0.04 1.08 7.51 -2.39 -0.02 1.07 16 24 H 0.08 1.38 8.07 -2.39 -0.02 1.36 16 25 H 0.39 7.02 9.12 -74.06 -0.68 6.34 16 26 H 0.06 1.63 7.92 -2.39 -0.02 1.61 16 27 H 0.11 2.01 8.10 -2.39 -0.02 1.99 16 28 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.06 1.68 7.61 -2.39 -0.02 1.66 16 30 H 0.11 2.07 8.05 -2.39 -0.02 2.05 16 31 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 Total: -1.00 -82.00 263.79 0.52 -81.48 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.25 Total: 27.76 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 2.89 Total: 1.14 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -2.16 Total: -90.11 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -1.99 Total: -64.03 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -82.00 0.52 -81.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275126.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.257 kcal (2) G-P(sol) polarization free energy of solvation -81.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds