Wall clock time and date at job start Sun Mar 29 2020 21:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36840 * 120.00193 * 2 1 4 4 H 1.08003 * 120.00097 * 212.19319 * 3 2 1 5 5 C 1.39055 * 119.99552 * 32.19663 * 3 2 1 6 6 N 1.31357 * 120.00542 * 12.71683 * 5 3 2 7 7 Si 1.86804 * 119.99838 * 192.72047 * 5 3 2 8 8 H 1.48501 * 109.47115 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47322 * 119.99525 * 7 5 3 10 10 H 1.48496 * 109.47212 * 239.99947 * 7 5 3 11 11 C 1.34782 * 120.00025 * 180.02562 * 2 1 3 12 12 O 1.21665 * 120.00100 * 184.96040 * 11 2 1 13 13 C 1.47035 * 119.99849 * 4.96743 * 11 2 1 14 14 C 1.38365 * 128.47946 * 174.40657 * 13 11 2 15 15 N 1.31219 * 111.86018 * 180.26120 * 14 13 11 16 16 N 1.27335 * 120.05284 * 359.46248 * 15 14 13 17 17 S 1.56636 * 109.75848 * 0.52272 * 16 15 14 18 18 H 1.09009 * 109.46958 * 242.45886 * 1 2 3 19 19 H 1.08994 * 109.47305 * 2.45741 * 1 2 3 20 20 H 1.09000 * 109.47315 * 122.46038 * 1 2 3 21 21 H 0.96999 * 120.00041 * 180.02562 * 6 5 3 22 22 H 1.08001 * 124.06576 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1047 1.2569 -0.4983 5 6 1.6143 2.2967 0.6417 6 7 0.5900 2.1576 1.4523 7 14 2.3521 3.9880 0.3509 8 1 3.4893 3.8755 -0.5976 9 1 1.3180 4.8878 -0.2201 10 1 2.8362 4.5451 1.6394 11 6 2.1389 -1.1672 -0.0005 12 8 3.3521 -1.1693 0.0906 13 6 1.4078 -2.4381 -0.1114 14 6 1.9195 -3.7178 -0.2350 15 7 0.9687 -4.6185 -0.3149 16 7 -0.2529 -4.2626 -0.2643 17 16 -0.3451 -2.7057 -0.1190 18 1 -0.3633 -0.4752 0.9113 19 1 -0.3633 1.0267 -0.0441 20 1 -0.3634 -0.5516 -0.8671 21 1 0.2167 2.9331 1.8996 22 1 2.9744 -3.9470 -0.2669 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082276672.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:14 Heat of formation + Delta-G solvation = 47.033916 kcal Electronic energy + Delta-G solvation = -11930.740403 eV Core-core repulsion = 9614.294697 eV Total energy + Delta-G solvation = -2316.445706 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.07231 -38.52830 -35.00870 -32.22564 -31.18477 -27.27648 -26.64841 -24.69787 -22.12430 -19.31344 -18.60946 -17.23723 -16.12339 -15.47555 -15.20553 -14.65338 -14.04012 -13.95367 -13.04772 -12.24019 -12.06601 -11.82913 -11.70209 -11.31456 -11.13827 -10.82203 -10.51312 -9.60059 -9.44348 -9.22636 -9.09264 -8.86151 -7.95563 -6.73778 -4.24732 0.36334 1.46537 2.19281 2.58386 3.00104 3.08608 3.14683 3.82997 3.94473 4.43758 4.69127 4.78370 5.43845 5.48969 5.96443 6.17281 6.24873 6.81258 7.19085 7.78668 8.08885 8.26446 8.78446 8.92772 9.57430 10.29649 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.064747 B = 0.009481 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.348798 B = 2952.418530 C = 3302.605839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.411 5.411 3 C -0.290 4.290 4 H 0.106 0.894 5 C 0.034 3.966 6 N -0.856 5.856 7 Si 0.935 3.065 8 H -0.263 1.263 9 H -0.276 1.276 10 H -0.277 1.277 11 C 0.504 3.496 12 O -0.570 6.570 13 C -0.230 4.230 14 C 0.021 3.979 15 N -0.255 5.255 16 N -0.323 5.323 17 S 0.388 5.612 18 H 0.056 0.944 19 H 0.113 0.887 20 H 0.036 0.964 21 H 0.277 0.723 22 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -1.422 -2.345 4.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.128 5.128 3 C -0.421 4.421 4 H 0.124 0.876 5 C -0.173 4.173 6 N -0.492 5.492 7 Si 0.761 3.239 8 H -0.187 1.187 9 H -0.201 1.201 10 H -0.202 1.202 11 C 0.292 3.708 12 O -0.456 6.456 13 C -0.371 4.371 14 C -0.146 4.146 15 N -0.119 5.119 16 N -0.302 5.302 17 S 0.524 5.476 18 H 0.074 0.926 19 H 0.131 0.869 20 H 0.054 0.946 21 H 0.088 0.912 22 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.039 -2.160 -2.243 5.923 hybrid contribution 1.597 1.077 0.103 1.929 sum -3.441 -1.083 -2.140 4.195 Atomic orbital electron populations 1.21966 0.81652 1.05303 0.98198 1.43543 1.05550 1.04738 1.58953 1.19882 1.05711 0.84794 1.31666 0.87606 1.25616 0.96604 1.01182 0.93947 1.69890 1.23074 1.32025 1.24250 0.85706 0.79283 0.80116 0.78830 1.18706 1.20134 1.20208 1.16561 0.87028 0.81025 0.86139 1.90684 1.12550 1.85500 1.56838 1.28461 0.97460 1.00848 1.10341 1.24163 1.01535 0.86545 1.02399 1.70614 0.93979 1.32522 1.14784 1.78514 1.15265 1.12744 1.23692 1.82955 1.06326 1.04965 1.53337 0.92590 0.86856 0.94564 0.91240 0.77844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 7.63 59.84 0.46 1.96 14 2 N -0.41 -9.88 2.97 -123.57 -0.37 -10.25 14 3 C -0.29 -7.38 9.04 -15.01 -0.14 -7.51 14 4 H 0.11 2.78 7.66 -52.48 -0.40 2.37 14 5 C 0.03 0.80 4.98 -17.45 -0.09 0.72 14 6 N -0.86 -20.60 11.10 55.50 0.62 -19.99 14 7 Si 0.94 18.57 29.57 -169.99 -5.03 13.54 14 8 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 9 H -0.28 -5.30 7.11 56.52 0.40 -4.90 14 10 H -0.28 -5.54 7.11 56.52 0.40 -5.13 14 11 C 0.50 12.15 7.60 -12.69 -0.10 12.05 14 12 O -0.57 -15.48 16.82 5.22 0.09 -15.39 14 13 C -0.23 -4.65 6.57 -35.97 -0.24 -4.89 14 14 C 0.02 0.39 11.56 -17.77 -0.21 0.18 14 15 N -0.25 -4.85 11.54 30.38 0.35 -4.50 14 16 N -0.32 -6.00 12.51 60.35 0.75 -5.25 14 17 S 0.39 6.61 18.78 -107.50 -2.02 4.59 14 18 H 0.06 1.09 7.01 -51.92 -0.36 0.73 14 19 H 0.11 2.39 5.92 -51.93 -0.31 2.09 14 20 H 0.04 0.63 6.18 -43.68 -0.27 0.36 14 21 H 0.28 6.20 8.31 -40.82 -0.34 5.86 14 22 H 0.21 3.38 8.06 -52.49 -0.42 2.95 14 LS Contribution 215.13 15.07 3.24 3.24 Total: -1.00 -28.42 215.13 -3.57 -31.99 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -0.90 Total: -0.50 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.30 Total: 2.52 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 1.35 Total: -39.99 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -2.02 Total: 4.59 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -28.42 -3.57 -31.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082276672.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.020 kcal (2) G-P(sol) polarization free energy of solvation -28.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds