Wall clock time and date at job start Sun Mar 29 2020 21:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36840 * 120.00193 * 2 1 4 4 H 1.08003 * 120.00097 * 212.19319 * 3 2 1 5 5 C 1.39055 * 119.99552 * 32.19663 * 3 2 1 6 6 N 1.31357 * 120.00542 * 12.71683 * 5 3 2 7 7 Si 1.86804 * 119.99838 * 192.72047 * 5 3 2 8 8 H 1.48501 * 109.47115 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47322 * 119.99525 * 7 5 3 10 10 H 1.48496 * 109.47212 * 239.99947 * 7 5 3 11 11 C 1.34782 * 120.00025 * 180.02562 * 2 1 3 12 12 O 1.21665 * 120.00100 * 184.96040 * 11 2 1 13 13 C 1.47035 * 119.99849 * 4.96743 * 11 2 1 14 14 C 1.38365 * 128.47946 * 174.40657 * 13 11 2 15 15 N 1.31219 * 111.86018 * 180.26120 * 14 13 11 16 16 N 1.27335 * 120.05284 * 359.46248 * 15 14 13 17 17 S 1.56636 * 109.75848 * 0.52272 * 16 15 14 18 18 H 1.09009 * 109.46958 * 242.45886 * 1 2 3 19 19 H 1.08994 * 109.47305 * 2.45741 * 1 2 3 20 20 H 1.09000 * 109.47315 * 122.46038 * 1 2 3 21 21 H 0.96999 * 120.00041 * 180.02562 * 6 5 3 22 22 H 1.08001 * 124.06576 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1047 1.2569 -0.4983 5 6 1.6143 2.2967 0.6417 6 7 0.5900 2.1576 1.4523 7 14 2.3521 3.9880 0.3509 8 1 3.4893 3.8755 -0.5976 9 1 1.3180 4.8878 -0.2201 10 1 2.8362 4.5451 1.6394 11 6 2.1389 -1.1672 -0.0005 12 8 3.3521 -1.1693 0.0906 13 6 1.4078 -2.4381 -0.1114 14 6 1.9195 -3.7178 -0.2350 15 7 0.9687 -4.6185 -0.3149 16 7 -0.2529 -4.2626 -0.2643 17 16 -0.3451 -2.7057 -0.1190 18 1 -0.3633 -0.4752 0.9113 19 1 -0.3633 1.0267 -0.0441 20 1 -0.3634 -0.5516 -0.8671 21 1 0.2167 2.9331 1.8996 22 1 2.9744 -3.9470 -0.2669 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082276672.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:14 Heat of formation + Delta-G solvation = 27.317976 kcal Electronic energy + Delta-G solvation = -11931.595350 eV Core-core repulsion = 9614.294697 eV Total energy + Delta-G solvation = -2317.300653 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.63268 -40.32586 -36.85411 -34.01772 -32.78805 -28.94446 -28.31165 -26.43020 -23.76332 -20.97441 -20.15464 -19.05723 -17.82453 -17.21134 -16.84836 -16.27903 -15.71919 -15.57364 -14.74121 -13.94602 -13.69747 -13.48654 -13.39637 -12.84956 -12.73393 -12.62832 -12.08026 -11.23703 -10.97412 -10.83828 -10.76070 -10.64910 -9.75795 -8.51127 -6.16020 -1.16588 -0.06188 0.67442 1.03284 1.43126 1.46168 1.59339 2.16025 2.20812 2.73948 2.97435 3.16119 3.81541 3.90373 4.37438 4.64339 4.71770 5.16882 5.34211 5.97830 6.28664 6.73503 6.95801 7.14140 7.75028 8.52792 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.064747 B = 0.009481 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.348798 B = 2952.418530 C = 3302.605839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.426 5.426 3 C -0.336 4.336 4 H 0.082 0.918 5 C 0.007 3.993 6 N -0.877 5.877 7 Si 0.997 3.003 8 H -0.269 1.269 9 H -0.260 1.260 10 H -0.276 1.276 11 C 0.500 3.500 12 O -0.613 6.613 13 C -0.270 4.270 14 C 0.041 3.959 15 N -0.267 5.267 16 N -0.325 5.325 17 S 0.481 5.519 18 H 0.062 0.938 19 H 0.104 0.896 20 H 0.064 0.936 21 H 0.284 0.716 22 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -1.774 -2.514 5.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.143 5.143 3 C -0.465 4.465 4 H 0.100 0.900 5 C -0.198 4.198 6 N -0.514 5.514 7 Si 0.819 3.181 8 H -0.194 1.194 9 H -0.184 1.184 10 H -0.202 1.202 11 C 0.289 3.711 12 O -0.502 6.502 13 C -0.411 4.411 14 C -0.126 4.126 15 N -0.131 5.131 16 N -0.305 5.305 17 S 0.617 5.383 18 H 0.080 0.920 19 H 0.122 0.878 20 H 0.082 0.918 21 H 0.094 0.906 22 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.427 -2.492 -2.411 7.303 hybrid contribution 1.894 0.965 0.150 2.131 sum -4.533 -1.527 -2.261 5.291 Atomic orbital electron populations 1.22011 0.79710 1.05373 0.99598 1.43696 1.06851 1.04373 1.59332 1.19798 1.06150 0.86357 1.34240 0.90003 1.26289 0.96750 1.03709 0.93076 1.69925 1.23723 1.33154 1.24551 0.84821 0.78653 0.76203 0.78398 1.19365 1.18421 1.20179 1.16983 0.86832 0.82165 0.85108 1.90629 1.14583 1.86597 1.58362 1.28138 1.00028 0.99689 1.13243 1.24492 1.02409 0.85900 0.99819 1.70735 0.93899 1.32452 1.15987 1.78365 1.15489 1.14193 1.22449 1.82639 1.02874 1.02874 1.49908 0.91976 0.87801 0.91780 0.90612 0.76284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.06 7.63 127.77 0.98 4.03 14 2 N -0.43 -20.67 2.97 -663.08 -1.97 -22.64 14 3 C -0.34 -17.57 9.04 84.11 0.76 -16.81 14 4 H 0.08 4.53 7.66 -2.91 -0.02 4.51 14 5 C 0.01 0.33 4.98 84.96 0.42 0.75 14 6 N -0.88 -42.02 11.10 21.68 0.24 -41.78 14 7 Si 1.00 38.14 29.57 68.60 2.03 40.17 14 8 H -0.27 -10.45 7.11 99.48 0.71 -9.74 14 9 H -0.26 -9.20 7.11 99.48 0.71 -8.49 14 10 H -0.28 -10.49 7.11 99.48 0.71 -9.79 14 11 C 0.50 24.28 7.60 86.55 0.66 24.94 14 12 O -0.61 -34.19 16.82 -4.24 -0.07 -34.26 14 13 C -0.27 -10.52 6.57 24.61 0.16 -10.36 14 14 C 0.04 1.47 11.56 84.81 0.98 2.45 14 15 N -0.27 -9.45 11.54 -57.80 -0.67 -10.11 14 16 N -0.33 -10.99 12.51 37.02 0.46 -10.53 14 17 S 0.48 14.85 18.78 -56.49 -1.06 13.79 14 18 H 0.06 2.31 7.01 -2.38 -0.02 2.29 14 19 H 0.10 4.32 5.92 -2.39 -0.01 4.30 14 20 H 0.06 2.08 6.18 -7.63 -0.05 2.03 14 21 H 0.28 12.50 8.31 -92.71 -0.77 11.73 14 22 H 0.22 6.92 8.06 -2.91 -0.02 6.90 14 Total: -1.00 -60.77 215.13 4.15 -56.62 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.23 Total: 3.74 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 3.96 Total: 5.00 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.93 Total: -85.06 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.07 Total: -34.26 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 16 Polarization: 14.85 SS G_CDS: -1.06 Total: 13.79 kcal Total: -60.77 4.15 -56.62 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082276672.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.936 kcal (2) G-P(sol) polarization free energy of solvation -60.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds