Wall clock time and date at job start Sun Mar 29 2020 22:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48508 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 299.99501 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99574 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.82995 * 305.56625 * 14 13 12 16 16 C 1.54391 * 109.83049 * 184.58364 * 14 13 12 17 17 C 1.55299 * 102.25167 * 219.13082 * 16 14 13 18 18 C 1.54939 * 100.94417 * 34.13696 * 17 16 14 19 19 O 1.43236 * 109.83063 * 66.45745 * 14 13 12 20 20 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 21 21 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 23 23 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 24 24 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 25 25 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 26 26 H 1.08999 * 110.84654 * 337.32320 * 16 14 13 27 27 H 1.09005 * 110.84289 * 100.94099 * 16 14 13 28 28 H 1.08999 * 111.12641 * 276.21179 * 17 16 14 29 29 H 1.09004 * 111.15957 * 152.07109 * 17 16 14 30 30 H 1.09002 * 110.30933 * 204.63506 * 18 17 16 31 31 H 1.08999 * 110.31470 * 82.46618 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 6 2.2382 -6.0258 0.0007 14 6 1.4732 -7.3508 0.0008 15 1 0.7715 -7.3726 0.8345 16 6 2.4650 -8.5282 0.1176 17 6 1.8450 -9.5781 -0.8442 18 6 1.2479 -8.6581 -1.9386 19 8 0.7647 -7.5029 -1.2348 20 1 -0.4850 0.8400 -0.0004 21 1 0.3535 -2.3907 0.0005 22 1 0.6170 -4.9209 0.8897 23 1 0.6175 -4.9205 -0.8902 24 1 2.8655 -5.9680 -0.8888 25 1 2.8642 -5.9680 0.8912 26 1 3.4589 -8.2330 -0.2189 27 1 2.4970 -8.9086 1.1387 28 1 1.0649 -10.1543 -0.3467 29 1 2.6113 -10.2340 -1.2575 30 1 0.4267 -9.1611 -2.4491 31 1 2.0191 -8.3704 -2.6532 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082303845.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:22 Heat of formation + Delta-G solvation = -104.643265 kcal Electronic energy + Delta-G solvation = -13980.533540 eV Core-core repulsion = 11454.131186 eV Total energy + Delta-G solvation = -2526.402355 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47941 -38.01582 -34.02263 -32.84827 -32.05944 -31.12155 -28.40006 -25.23720 -23.41253 -21.68300 -20.60723 -18.92289 -17.74043 -16.89038 -16.18919 -15.47103 -14.61325 -14.44872 -14.09107 -13.90213 -13.34929 -13.22161 -12.60061 -12.09424 -11.78694 -11.52926 -11.44059 -11.25965 -11.05546 -10.85305 -10.62487 -10.36409 -10.29877 -10.14801 -9.46641 -9.37361 -8.29557 -7.90319 -6.35808 -3.76506 3.20056 3.29869 3.37478 3.89344 4.01446 4.22637 4.47149 4.71782 4.82364 5.08620 5.21217 5.31531 5.33970 5.49450 5.61962 5.65577 5.73350 5.82658 5.86476 5.95359 6.12667 6.22159 6.58348 6.62908 6.73165 7.16110 7.60668 8.12900 8.68101 9.23832 9.62812 10.14454 10.82163 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.079910 B = 0.005417 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.311507 B = 5167.942120 C = 5337.142012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.601 6.601 12 C -0.127 4.127 13 C -0.105 4.105 14 C 0.078 3.922 15 H 0.079 0.921 16 C -0.152 4.152 17 C -0.157 4.157 18 C 0.049 3.951 19 O -0.376 6.376 20 H 0.270 0.730 21 H 0.393 0.607 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -15.527 -0.599 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.487 6.487 12 C -0.167 4.167 13 C -0.143 4.143 14 C 0.021 3.979 15 H 0.097 0.903 16 C -0.189 4.189 17 C -0.195 4.195 18 C -0.027 4.027 19 O -0.296 6.296 20 H 0.080 0.920 21 H 0.226 0.774 22 H 0.092 0.908 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.598 -15.210 -0.667 15.236 hybrid contribution -0.089 0.751 0.066 0.759 sum 0.509 -14.458 -0.601 14.480 Atomic orbital electron populations 1.69628 1.05935 1.27965 1.50833 1.25265 0.95621 0.99698 0.97444 0.85811 0.79683 0.81221 0.77676 1.19267 1.20767 1.20778 1.19777 0.93393 0.82444 1.47347 0.87963 1.41938 1.09270 1.04738 1.64120 1.20079 0.88271 0.85209 0.83718 1.90492 1.14171 1.87608 1.56420 1.21422 0.98800 0.93541 1.02967 1.21628 0.97433 0.91727 1.03547 1.22893 0.93098 0.94930 0.87015 0.90349 1.23189 1.00007 0.95114 1.00603 1.23259 1.00764 0.98255 0.97212 1.23339 0.98655 0.86069 0.94678 1.88461 1.60916 1.46690 1.33488 0.91972 0.77355 0.90813 0.89946 0.91088 0.90607 0.90158 0.90166 0.90609 0.90224 0.90105 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 13.05 55.50 0.72 -24.61 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.30 -8.69 9.68 -14.93 -0.14 -8.83 16 8 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 9 N -0.57 -15.09 5.29 -10.96 -0.06 -15.15 16 10 C 0.44 10.99 7.78 -10.98 -0.09 10.91 16 11 O -0.60 -16.94 15.56 5.54 0.09 -16.86 16 12 C -0.13 -2.41 5.61 -27.88 -0.16 -2.57 16 13 C -0.11 -1.77 4.07 -26.73 -0.11 -1.87 16 14 C 0.08 1.05 3.52 -26.00 -0.09 0.96 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.15 -1.61 6.54 -24.78 -0.16 -1.77 16 17 C -0.16 -1.43 7.15 -24.49 -0.18 -1.60 16 18 C 0.05 0.54 7.78 38.18 0.30 0.84 16 19 O -0.38 -5.54 10.63 -35.23 -0.37 -5.92 16 20 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 21 H 0.39 10.08 7.90 -40.82 -0.32 9.76 16 22 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.08 1.53 7.88 -51.93 -0.41 1.12 16 24 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 25 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 26 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 265.33 15.07 4.00 4.00 Total: -1.00 -32.24 265.33 -5.82 -38.06 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.45 Total: 7.40 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.72 Total: -3.45 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.67 Total: -39.76 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.29 Total: -22.77 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.24 -5.82 -38.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303845.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.581 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds