Wall clock time and date at job start Sun Mar 29 2020 22:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48508 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 299.99501 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99574 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.82995 * 305.56625 * 14 13 12 16 16 C 1.54391 * 109.83049 * 184.58364 * 14 13 12 17 17 C 1.55299 * 102.25167 * 219.13082 * 16 14 13 18 18 C 1.54939 * 100.94417 * 34.13696 * 17 16 14 19 19 O 1.43236 * 109.83063 * 66.45745 * 14 13 12 20 20 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 21 21 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 23 23 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 24 24 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 25 25 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 26 26 H 1.08999 * 110.84654 * 337.32320 * 16 14 13 27 27 H 1.09005 * 110.84289 * 100.94099 * 16 14 13 28 28 H 1.08999 * 111.12641 * 276.21179 * 17 16 14 29 29 H 1.09004 * 111.15957 * 152.07109 * 17 16 14 30 30 H 1.09002 * 110.30933 * 204.63506 * 18 17 16 31 31 H 1.08999 * 110.31470 * 82.46618 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 6 2.2382 -6.0258 0.0007 14 6 1.4732 -7.3508 0.0008 15 1 0.7715 -7.3726 0.8345 16 6 2.4650 -8.5282 0.1176 17 6 1.8450 -9.5781 -0.8442 18 6 1.2479 -8.6581 -1.9386 19 8 0.7647 -7.5029 -1.2348 20 1 -0.4850 0.8400 -0.0004 21 1 0.3535 -2.3907 0.0005 22 1 0.6170 -4.9209 0.8897 23 1 0.6175 -4.9205 -0.8902 24 1 2.8655 -5.9680 -0.8888 25 1 2.8642 -5.9680 0.8912 26 1 3.4589 -8.2330 -0.2189 27 1 2.4970 -8.9086 1.1387 28 1 1.0649 -10.1543 -0.3467 29 1 2.6113 -10.2340 -1.2575 30 1 0.4267 -9.1611 -2.4491 31 1 2.0191 -8.3704 -2.6532 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082303845.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:22 Heat of formation + Delta-G solvation = -127.310223 kcal Electronic energy + Delta-G solvation = -13981.516453 eV Core-core repulsion = 11454.131186 eV Total energy + Delta-G solvation = -2527.385268 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60970 -39.88756 -36.08783 -34.31075 -33.26711 -32.92984 -29.65907 -27.09339 -24.86944 -22.55399 -21.77788 -20.83981 -19.84491 -17.87933 -17.79161 -16.83051 -16.41843 -16.14346 -15.83884 -15.21747 -14.49951 -14.42506 -14.30456 -13.56888 -13.51460 -12.93037 -12.85344 -12.58247 -12.43623 -12.19480 -12.13112 -11.77723 -11.75320 -11.61567 -11.54136 -10.42913 -10.34780 -10.04218 -8.48478 -5.98317 1.35792 1.40470 1.55595 2.03124 2.29367 2.96833 3.18627 3.21354 3.65280 3.90071 4.02553 4.15835 4.22033 4.33054 4.44682 4.56010 4.72989 4.84918 4.87343 4.93852 4.98589 5.02343 5.17436 5.28690 5.39092 5.39839 5.98001 6.18648 6.56509 7.09377 7.53525 8.08500 8.69403 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.079910 B = 0.005417 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.311507 B = 5167.942120 C = 5337.142012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.997 3.003 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.339 4.339 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.434 3.566 11 O -0.638 6.638 12 C -0.115 4.115 13 C -0.100 4.100 14 C 0.080 3.920 15 H 0.092 0.908 16 C -0.150 4.150 17 C -0.146 4.146 18 C 0.037 3.963 19 O -0.403 6.403 20 H 0.279 0.721 21 H 0.396 0.604 22 H 0.098 0.902 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 -16.353 -0.314 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.820 3.180 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.527 6.527 12 C -0.155 4.155 13 C -0.138 4.138 14 C 0.023 3.977 15 H 0.109 0.891 16 C -0.188 4.188 17 C -0.183 4.183 18 C -0.039 4.039 19 O -0.324 6.324 20 H 0.088 0.912 21 H 0.230 0.770 22 H 0.117 0.883 23 H 0.107 0.893 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.092 -16.055 -0.387 16.060 hybrid contribution 0.042 0.991 -0.051 0.994 sum 0.135 -15.063 -0.438 15.070 Atomic orbital electron populations 1.69690 1.06957 1.29359 1.50191 1.26112 0.96577 1.02586 0.96065 0.84826 0.77957 0.76783 0.78459 1.19757 1.19469 1.19340 1.19763 0.92751 0.84182 1.50150 0.90324 1.42037 1.09378 1.04932 1.64660 1.21136 0.88189 0.86586 0.81796 1.90457 1.16116 1.88395 1.57685 1.21408 0.98944 0.90777 1.04343 1.21601 0.96985 0.92978 1.02267 1.22877 0.93702 0.93917 0.87247 0.89052 1.23197 0.98892 0.94392 1.02304 1.23247 1.01428 0.97700 0.95968 1.23590 0.99405 0.85685 0.95211 1.88427 1.61376 1.48446 1.34108 0.91196 0.76971 0.88332 0.89317 0.93309 0.91036 0.90830 0.88144 0.89221 0.88248 0.88454 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.31 13.05 21.66 0.28 -51.03 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.34 -20.08 9.68 84.04 0.81 -19.27 16 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.57 -31.32 5.29 -306.98 -1.62 -32.94 16 10 C 0.43 22.12 7.78 87.66 0.68 22.80 16 11 O -0.64 -37.12 15.56 -3.08 -0.05 -37.16 16 12 C -0.11 -4.33 5.61 29.85 0.17 -4.16 16 13 C -0.10 -3.34 4.07 30.59 0.12 -3.21 16 14 C 0.08 2.03 3.52 31.07 0.11 2.14 16 15 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 16 C -0.15 -2.85 6.54 31.86 0.21 -2.64 16 17 C -0.15 -2.22 7.15 32.05 0.23 -1.99 16 18 C 0.04 0.75 7.78 72.65 0.56 1.32 16 19 O -0.40 -11.35 10.63 -148.98 -1.58 -12.93 16 20 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 21 H 0.40 20.64 7.90 -92.71 -0.73 19.91 16 22 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 23 H 0.09 3.27 7.88 -2.39 -0.02 3.25 16 24 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 25 H 0.07 2.41 8.10 -2.38 -0.02 2.39 16 26 H 0.07 1.49 7.85 -2.39 -0.02 1.47 16 27 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.14 8.14 -2.38 -0.02 1.13 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.70 265.33 2.81 -66.89 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.39 Total: 26.52 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 3.37 Total: -5.30 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -1.34 Total: -83.97 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -1.63 Total: -50.10 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -69.70 2.81 -66.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303845.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.417 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds