Wall clock time and date at job start Sun Mar 29 2020 21:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36958 * 119.99780 * 2 1 4 4 H 1.07997 * 120.00016 * 139.01233 * 3 2 1 5 5 C 1.38985 * 120.00109 * 319.00779 * 3 2 1 6 6 N 1.31403 * 120.00150 * 350.21524 * 5 3 2 7 7 Si 1.86803 * 120.00136 * 170.21457 * 5 3 2 8 8 H 1.48503 * 109.46877 * 59.99883 * 7 5 3 9 9 H 1.48495 * 109.47231 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47179 * 300.00431 * 7 5 3 11 11 C 1.34769 * 119.99941 * 180.02562 * 2 1 3 12 12 O 1.21632 * 120.00473 * 5.41358 * 11 2 1 13 13 C 1.47366 * 119.99886 * 185.41348 * 11 2 1 14 14 C 1.38057 * 124.16664 * 169.39396 * 13 11 2 15 15 S 1.72107 * 104.03049 * 179.97438 * 14 13 11 16 16 N 1.56401 * 96.16151 * 359.97438 * 15 14 13 17 17 N 1.27413 * 109.89261 * 0.02562 * 16 15 14 18 18 H 1.09002 * 109.47017 * 182.56658 * 1 2 3 19 19 H 1.08994 * 109.47333 * 302.57356 * 1 2 3 20 20 H 1.09001 * 109.46605 * 62.57117 * 1 2 3 21 21 H 0.97001 * 120.00479 * 179.97438 * 6 5 3 22 22 H 1.08003 * 127.98644 * 0.23616 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.0312 1.3008 0.6134 5 6 1.7104 2.2422 -0.7895 6 7 0.7605 2.0486 -1.6766 7 14 2.4703 3.9370 -0.5897 8 1 3.9270 3.8623 -0.8686 9 1 1.8314 4.8812 -1.5412 10 1 2.2563 4.4147 0.7999 11 6 2.1388 -1.1671 -0.0005 12 8 1.5348 -2.2182 -0.1004 13 6 3.6076 -1.1700 0.1199 14 6 4.3653 -2.3031 0.3391 15 16 5.9836 -1.7194 0.3895 16 7 5.6272 -0.2154 0.1507 17 7 4.3658 -0.0827 0.0299 18 1 -0.3633 -1.0267 0.0460 19 1 -0.3634 0.5532 0.8660 20 1 -0.3632 0.4734 -0.9122 21 1 0.4536 2.7857 -2.2274 22 1 4.0222 -3.3212 0.4488 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082367200.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:18 Heat of formation + Delta-G solvation = 53.485793 kcal Electronic energy + Delta-G solvation = -12111.931231 eV Core-core repulsion = 9795.765300 eV Total energy + Delta-G solvation = -2316.165931 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.27384 -38.04559 -34.82980 -31.54382 -31.33258 -27.20737 -25.75377 -24.81515 -21.89001 -19.84317 -18.55657 -16.97071 -15.55679 -15.08990 -14.95999 -14.45840 -14.21550 -13.66730 -12.87247 -12.07665 -11.92315 -11.53028 -11.14635 -11.10794 -10.90749 -10.57379 -10.33919 -9.53603 -9.41086 -9.22397 -9.11016 -8.77322 -7.52624 -6.29912 -4.08154 0.64922 1.53010 2.16677 2.36348 3.23420 3.25695 3.31111 4.10372 4.24150 4.50309 4.84145 5.15208 5.46230 5.69335 6.22149 6.66736 6.80726 7.30960 7.62061 7.84509 8.28638 8.43074 9.06037 9.34381 9.77224 10.66766 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.013398 C = 0.009790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.015988 B = 2089.430515 C = 2859.518535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.409 5.409 3 C -0.325 4.325 4 H 0.114 0.886 5 C 0.046 3.954 6 N -0.868 5.868 7 Si 0.925 3.075 8 H -0.266 1.266 9 H -0.285 1.285 10 H -0.272 1.272 11 C 0.528 3.472 12 O -0.601 6.601 13 C 0.022 3.978 14 C -0.254 4.254 15 S 0.374 5.626 16 N -0.304 5.304 17 N -0.165 5.165 18 H 0.055 0.945 19 H 0.041 0.959 20 H 0.098 0.902 21 H 0.271 0.729 22 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.692 -4.132 3.577 8.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.124 5.124 3 C -0.454 4.454 4 H 0.131 0.869 5 C -0.160 4.160 6 N -0.505 5.505 7 Si 0.751 3.249 8 H -0.191 1.191 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.313 3.687 12 O -0.488 6.488 13 C -0.124 4.124 14 C -0.413 4.413 15 S 0.510 5.490 16 N -0.284 5.284 17 N -0.036 5.036 18 H 0.074 0.926 19 H 0.060 0.940 20 H 0.116 0.884 21 H 0.081 0.919 22 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.829 -3.407 3.358 9.175 hybrid contribution -1.140 0.299 -0.080 1.181 sum 6.689 -3.108 3.278 8.072 Atomic orbital electron populations 1.21840 0.80588 1.00519 1.03499 1.43364 1.05681 1.04618 1.58694 1.19982 1.11413 0.88426 1.25617 0.86914 1.25509 0.96138 1.00609 0.93727 1.69775 1.28036 1.32765 1.19954 0.86012 0.79893 0.80805 0.78169 1.19094 1.21000 1.19781 1.16960 0.82896 0.84999 0.83861 1.90648 1.67717 1.31893 1.58544 1.22951 0.98794 0.86984 1.03670 1.28644 0.98288 1.05630 1.08710 1.81082 1.10074 1.04859 1.53013 1.79057 1.12478 1.14416 1.22415 1.72199 0.94610 1.25439 1.11323 0.92616 0.93991 0.88373 0.91899 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.91 9.96 59.85 0.60 2.51 14 2 N -0.41 -10.83 2.91 -123.44 -0.36 -11.18 14 3 C -0.32 -8.69 7.93 -14.98 -0.12 -8.81 14 4 H 0.11 3.00 5.79 -52.49 -0.30 2.70 14 5 C 0.05 1.22 5.27 -17.46 -0.09 1.12 14 6 N -0.87 -23.50 11.09 55.50 0.62 -22.88 14 7 Si 0.93 20.67 29.56 -169.99 -5.03 15.64 14 8 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 14 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 14 11 C 0.53 13.56 7.61 -12.55 -0.10 13.47 14 12 O -0.60 -16.05 16.17 5.25 0.08 -15.97 14 13 C 0.02 0.50 6.65 -83.77 -0.56 -0.06 14 14 C -0.25 -4.40 11.23 30.67 0.34 -4.06 14 15 S 0.37 5.43 23.38 -107.50 -2.51 2.92 14 16 N -0.30 -5.97 12.49 60.35 0.75 -5.22 14 17 N -0.16 -3.78 8.23 32.74 0.27 -3.51 14 18 H 0.06 1.30 6.92 -51.93 -0.36 0.94 14 19 H 0.04 0.95 8.14 -51.93 -0.42 0.52 14 20 H 0.10 2.52 5.91 -51.93 -0.31 2.22 14 21 H 0.27 6.91 8.31 -40.82 -0.34 6.57 14 22 H 0.20 2.89 8.06 -52.48 -0.42 2.47 14 LS Contribution 216.93 15.07 3.27 3.27 Total: -1.00 -30.55 216.93 -3.78 -34.33 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -0.95 Total: -1.58 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 0.08 Total: 4.18 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 1.28 Total: -42.79 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.08 Total: -15.97 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -2.51 Total: 2.92 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.55 -3.78 -34.33 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082367200.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.816 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds