Wall clock time and date at job start Sun Mar 29 2020 21:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.50472 * 2 1 4 4 C 1.53056 * 109.48644 * 120.05356 * 2 1 3 5 5 N 1.46954 * 109.36346 * 178.36713 * 4 2 1 6 6 C 1.46899 * 111.00171 * 176.80801 * 5 4 2 7 7 C 1.52997 * 109.47043 * 189.84851 * 6 5 4 8 8 C 1.50706 * 109.46968 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00139 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46757 * 90.00859 * 12 10 8 14 14 H 1.48499 * 109.47149 * 210.00350 * 12 10 8 15 15 H 1.48490 * 109.47247 * 330.00474 * 12 10 8 16 16 C 1.46953 * 110.88290 * 300.68189 * 5 4 2 17 17 C 1.53056 * 109.36571 * 59.31944 * 16 5 4 18 18 N 1.46956 * 109.48673 * 239.94258 * 2 1 3 19 19 C 1.46898 * 111.00097 * 56.84971 * 18 2 1 20 20 H 1.08993 * 109.46960 * 299.94706 * 1 2 3 21 21 H 1.09002 * 109.46612 * 59.94784 * 1 2 3 22 22 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.48967 * 58.40424 * 4 2 1 24 24 H 1.08998 * 109.48697 * 298.33371 * 4 2 1 25 25 H 1.08998 * 109.47399 * 309.84706 * 6 5 4 26 26 H 1.08997 * 109.46876 * 69.85125 * 6 5 4 27 27 H 1.09000 * 109.47549 * 299.99797 * 7 6 5 28 28 H 1.09000 * 109.47520 * 60.00195 * 7 6 5 29 29 H 0.96999 * 120.00057 * 179.97438 * 11 10 8 30 30 H 1.08997 * 109.48869 * 299.34965 * 16 5 4 31 31 H 1.09004 * 109.49286 * 179.28418 * 16 5 4 32 32 H 1.08994 * 109.49121 * 61.56772 * 17 16 5 33 33 H 1.08998 * 109.48697 * 181.63542 * 17 16 5 34 34 H 1.09000 * 109.47043 * 179.84293 * 19 18 2 35 35 H 1.08999 * 109.46614 * 299.83911 * 19 18 2 36 36 H 1.09002 * 109.47268 * 59.84123 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 1.2489 5 7 3.5096 -0.7553 1.2266 6 6 4.0411 -1.3751 2.4478 7 6 5.5566 -1.1729 2.5043 8 6 6.1019 -1.8093 3.7569 9 1 5.4342 -2.3077 4.4440 10 6 7.4531 -1.7553 4.0256 11 7 8.2661 -1.1479 3.1891 12 14 8.1289 -2.5435 5.5785 13 1 8.4937 -3.9554 5.2983 14 1 9.3339 -1.8005 6.0267 15 1 7.0963 -2.5012 6.6447 16 6 4.0000 -1.4491 0.0275 17 6 3.4894 -0.7265 -1.2214 18 7 2.0203 -0.6939 -1.1991 19 6 1.4889 -0.0740 -2.4203 20 1 -0.3633 0.5130 0.8904 21 1 -0.3632 0.5147 -0.8896 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6544 -1.7418 1.2628 24 1 1.7022 -0.1929 2.1394 25 1 3.5800 -0.9124 3.3203 26 1 3.8169 -2.4418 2.4410 27 1 6.0178 -1.6356 1.6318 28 1 5.7809 -0.1062 2.5111 29 1 9.2167 -1.1095 3.3783 30 1 3.6360 -2.4765 0.0275 31 1 5.0900 -1.4491 0.0275 32 1 3.8756 0.2926 -1.2353 33 1 3.8278 -1.2562 -2.1119 34 1 1.8696 -0.6052 -3.2926 35 1 0.4002 -0.1259 -2.4098 36 1 1.8026 0.9690 -2.4644 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082478095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:17 Heat of formation + Delta-G solvation = 1.588888 kcal Electronic energy + Delta-G solvation = -14573.526703 eV Core-core repulsion = 12285.282677 eV Total energy + Delta-G solvation = -2288.244026 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21665 -35.67289 -32.94617 -32.26651 -30.10531 -27.92890 -26.42048 -24.47165 -22.94609 -22.14003 -19.86162 -19.37693 -16.48993 -15.58538 -15.38600 -14.82799 -14.51554 -14.46924 -13.95036 -13.62770 -12.95289 -12.59164 -12.18232 -12.03381 -12.00398 -11.67338 -11.52171 -11.10866 -10.92697 -10.86619 -10.65256 -10.51356 -10.29310 -9.79935 -9.29743 -9.09529 -8.31225 -8.24234 -7.67261 -5.97708 -3.99950 3.33538 3.39627 3.43105 4.00119 4.39108 4.56663 4.97403 5.12876 5.20497 5.38241 5.40432 5.46729 5.59809 5.65742 5.70647 5.76276 5.79971 5.87773 5.96554 6.07375 6.22232 6.28251 6.37330 6.46434 6.54671 6.99680 7.13131 7.17605 7.55534 7.61432 7.82941 7.92474 8.10750 8.45995 9.07298 9.63599 11.13772 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065305 B = 0.006040 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.652274 B = 4634.504878 C = 4926.706268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.047 0.953 4 C 0.062 3.938 5 N -0.542 5.542 6 C 0.064 3.936 7 C 0.028 3.972 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.057 3.943 17 C 0.058 3.942 18 N -0.542 5.542 19 C 0.023 3.977 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.020 0.980 27 H 0.017 0.983 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 1.816 -8.558 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 H 0.065 0.935 4 C -0.067 4.067 5 N -0.266 5.266 6 C -0.063 4.063 7 C -0.009 4.009 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.072 4.072 17 C -0.070 4.070 18 N -0.267 5.267 19 C -0.125 4.125 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -12.841 1.863 -8.571 15.551 hybrid contribution 0.496 -0.417 0.816 1.043 sum -12.344 1.445 -7.755 14.650 Atomic orbital electron populations 1.21868 0.94525 1.02357 1.01544 1.21690 0.94627 0.96184 0.90150 0.93455 1.22147 0.89153 0.98879 0.96523 1.62241 1.06464 1.54562 1.03379 1.22314 0.99652 0.95097 0.89202 1.19096 0.87430 0.97732 0.96681 1.21203 0.92616 1.35507 1.06702 0.92801 1.24989 0.97122 0.95455 0.96729 1.69972 1.03720 1.43252 1.36375 0.86594 0.78543 0.79295 0.83566 1.20705 1.21214 1.19891 1.22165 1.01005 0.95129 0.88859 1.22202 0.86505 0.99891 0.98395 1.62199 1.09063 1.53489 1.01989 1.22387 1.00627 0.96918 0.92603 0.92132 0.92569 0.91964 0.94714 0.90809 0.92149 0.96166 0.96495 0.95790 0.93020 0.94733 0.89156 0.94081 0.90702 0.91709 0.91303 0.95877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.86 37.16 0.33 -1.25 16 2 C 0.08 1.14 2.56 -67.65 -0.17 0.97 16 3 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 4 C 0.06 0.99 4.89 -3.77 -0.02 0.97 16 5 N -0.54 -10.40 4.71 -234.47 -1.10 -11.51 16 6 C 0.06 1.40 4.90 -3.83 -0.02 1.38 16 7 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 8 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 12 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 C 0.06 1.02 5.41 -3.77 -0.02 1.00 16 17 C 0.06 0.87 5.62 -3.76 -0.02 0.85 16 18 N -0.54 -7.56 4.78 -234.72 -1.12 -8.68 16 19 C 0.02 0.25 9.13 60.06 0.55 0.80 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.54 6.37 -51.93 -0.33 0.21 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 25 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 26 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.02 0.47 6.49 -51.93 -0.34 0.13 16 28 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.77 6.33 -51.93 -0.33 1.44 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.07 0.67 6.26 -51.93 -0.33 0.34 16 36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 281.59 15.07 4.24 4.24 Total: -1.00 -30.33 281.59 -8.54 -38.87 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -6.35 Total: -4.96 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -1.49 Total: -46.60 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.33 -8.54 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.461 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds