Wall clock time and date at job start Sun Mar 29 2020 21:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.50472 * 2 1 4 4 C 1.53056 * 109.48644 * 120.05356 * 2 1 3 5 5 N 1.46954 * 109.36346 * 178.36713 * 4 2 1 6 6 C 1.46899 * 111.00171 * 176.80801 * 5 4 2 7 7 C 1.52997 * 109.47043 * 189.84851 * 6 5 4 8 8 C 1.50706 * 109.46968 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00139 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46757 * 90.00859 * 12 10 8 14 14 H 1.48499 * 109.47149 * 210.00350 * 12 10 8 15 15 H 1.48490 * 109.47247 * 330.00474 * 12 10 8 16 16 C 1.46953 * 110.88290 * 300.68189 * 5 4 2 17 17 C 1.53056 * 109.36571 * 59.31944 * 16 5 4 18 18 N 1.46956 * 109.48673 * 239.94258 * 2 1 3 19 19 C 1.46898 * 111.00097 * 56.84971 * 18 2 1 20 20 H 1.08993 * 109.46960 * 299.94706 * 1 2 3 21 21 H 1.09002 * 109.46612 * 59.94784 * 1 2 3 22 22 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.48967 * 58.40424 * 4 2 1 24 24 H 1.08998 * 109.48697 * 298.33371 * 4 2 1 25 25 H 1.08998 * 109.47399 * 309.84706 * 6 5 4 26 26 H 1.08997 * 109.46876 * 69.85125 * 6 5 4 27 27 H 1.09000 * 109.47549 * 299.99797 * 7 6 5 28 28 H 1.09000 * 109.47520 * 60.00195 * 7 6 5 29 29 H 0.96999 * 120.00057 * 179.97438 * 11 10 8 30 30 H 1.08997 * 109.48869 * 299.34965 * 16 5 4 31 31 H 1.09004 * 109.49286 * 179.28418 * 16 5 4 32 32 H 1.08994 * 109.49121 * 61.56772 * 17 16 5 33 33 H 1.08998 * 109.48697 * 181.63542 * 17 16 5 34 34 H 1.09000 * 109.47043 * 179.84293 * 19 18 2 35 35 H 1.08999 * 109.46614 * 299.83911 * 19 18 2 36 36 H 1.09002 * 109.47268 * 59.84123 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 1.2489 5 7 3.5096 -0.7553 1.2266 6 6 4.0411 -1.3751 2.4478 7 6 5.5566 -1.1729 2.5043 8 6 6.1019 -1.8093 3.7569 9 1 5.4342 -2.3077 4.4440 10 6 7.4531 -1.7553 4.0256 11 7 8.2661 -1.1479 3.1891 12 14 8.1289 -2.5435 5.5785 13 1 8.4937 -3.9554 5.2983 14 1 9.3339 -1.8005 6.0267 15 1 7.0963 -2.5012 6.6447 16 6 4.0000 -1.4491 0.0275 17 6 3.4894 -0.7265 -1.2214 18 7 2.0203 -0.6939 -1.1991 19 6 1.4889 -0.0740 -2.4203 20 1 -0.3633 0.5130 0.8904 21 1 -0.3632 0.5147 -0.8896 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6544 -1.7418 1.2628 24 1 1.7022 -0.1929 2.1394 25 1 3.5800 -0.9124 3.3203 26 1 3.8169 -2.4418 2.4410 27 1 6.0178 -1.6356 1.6318 28 1 5.7809 -0.1062 2.5111 29 1 9.2167 -1.1095 3.3783 30 1 3.6360 -2.4765 0.0275 31 1 5.0900 -1.4491 0.0275 32 1 3.8756 0.2926 -1.2353 33 1 3.8278 -1.2562 -2.1119 34 1 1.8696 -0.6052 -3.2926 35 1 0.4002 -0.1259 -2.4098 36 1 1.8026 0.9690 -2.4644 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082478095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:16 Heat of formation + Delta-G solvation = -19.916719 kcal Electronic energy + Delta-G solvation = -14574.459256 eV Core-core repulsion = 12285.282677 eV Total energy + Delta-G solvation = -2289.176579 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.48643 -37.15491 -35.02884 -33.40405 -31.93928 -29.31277 -27.67325 -26.17938 -24.26146 -23.68418 -21.57088 -20.61869 -18.61570 -16.89935 -16.66465 -16.48516 -16.15000 -15.70018 -15.44594 -15.04951 -14.37909 -14.15418 -13.85378 -13.42516 -13.03074 -12.90316 -12.83443 -12.73608 -12.67640 -12.40752 -12.04505 -11.95684 -11.81412 -11.63523 -11.27312 -11.07659 -10.54296 -9.37159 -9.19781 -8.20532 -6.32165 1.40235 1.42010 1.53215 2.40171 2.93075 3.03217 3.12901 3.85278 4.00578 4.05576 4.25979 4.31715 4.44499 4.49664 4.59493 4.62250 4.68077 4.74558 4.81274 4.84670 4.93219 4.99211 5.01269 5.09540 5.13900 5.35318 5.44142 5.63745 5.76115 6.01759 6.02781 6.17696 6.29041 6.32635 6.84568 7.37044 8.91795 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065305 B = 0.006040 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.652274 B = 4634.504878 C = 4926.706268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.036 0.964 4 C 0.061 3.939 5 N -0.555 5.555 6 C 0.081 3.919 7 C 0.037 3.963 8 C -0.546 4.546 9 H 0.060 0.940 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.968 3.032 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.263 1.263 16 C 0.058 3.942 17 C 0.066 3.934 18 N -0.550 5.550 19 C 0.023 3.977 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.034 0.966 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.018 0.982 27 H -0.006 1.006 28 H -0.009 1.009 29 H 0.264 0.736 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.543 1.481 -8.493 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 H 0.054 0.946 4 C -0.067 4.067 5 N -0.279 5.279 6 C -0.047 4.047 7 C 0.000 4.000 8 C -0.584 4.584 9 H 0.078 0.922 10 C -0.196 4.196 11 N -0.572 5.572 12 Si 0.792 3.208 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.187 1.187 16 C -0.070 4.070 17 C -0.062 4.062 18 N -0.275 5.275 19 C -0.124 4.124 20 H 0.090 0.910 21 H 0.092 0.908 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.013 0.987 28 H 0.009 0.991 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.381 1.531 -8.522 16.787 hybrid contribution 0.959 -0.288 0.743 1.247 sum -13.422 1.243 -7.778 15.563 Atomic orbital electron populations 1.21815 0.91744 1.02836 1.03026 1.21705 0.96699 0.94990 0.89124 0.94560 1.22261 0.86700 0.99334 0.98415 1.62175 1.08829 1.54363 1.02564 1.21957 0.96554 0.95214 0.90954 1.18912 0.90688 0.95079 0.95331 1.21623 0.93361 1.35903 1.07533 0.92189 1.25969 0.97429 0.95816 1.00389 1.70111 1.04183 1.44410 1.38513 0.85409 0.77910 0.78401 0.79085 1.19713 1.20648 1.18679 1.22112 0.99501 0.95441 0.89944 1.22088 0.87707 0.99060 0.97337 1.62223 1.07917 1.54181 1.03223 1.22474 1.01642 0.96893 0.91433 0.90992 0.90843 0.91909 0.94793 0.90033 0.91730 0.96328 0.98724 0.99057 0.92721 0.95049 0.91885 0.95058 0.88773 0.90584 0.89505 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.86 71.98 0.64 -1.92 16 2 C 0.08 2.17 2.56 44.93 0.12 2.29 16 3 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 4 C 0.06 1.90 4.89 86.31 0.42 2.32 16 5 N -0.55 -21.58 4.71 -895.72 -4.22 -25.80 16 6 C 0.08 3.60 4.90 86.30 0.42 4.02 16 7 C 0.04 2.06 4.90 29.85 0.15 2.21 16 8 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 9 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 10 C 0.00 0.11 5.46 84.65 0.46 0.57 16 11 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 12 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 16 C 0.06 2.14 5.41 86.31 0.47 2.61 16 17 C 0.07 1.95 5.62 86.31 0.49 2.44 16 18 N -0.55 -14.31 4.78 -896.51 -4.29 -18.60 16 19 C 0.02 0.44 9.13 127.69 1.17 1.61 16 20 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.07 1.14 6.37 -2.39 -0.02 1.12 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 25 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 26 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 27 H -0.01 -0.33 6.49 -2.39 -0.02 -0.34 16 28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.06 2.62 6.33 -2.38 -0.02 2.60 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 34 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 35 H 0.09 1.37 6.26 -2.39 -0.01 1.35 16 36 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -65.66 281.59 -0.63 -66.28 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.01 Total: 4.29 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 4.56 Total: -15.51 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -8.22 Total: -101.91 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.66 -0.63 -66.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.367 kcal (2) G-P(sol) polarization free energy of solvation -65.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds