Wall clock time and date at job start Sun Mar 29 2020 21:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.47050 * 2 1 4 4 C 1.46956 * 111.00196 * 66.05103 * 3 2 1 5 5 C 1.53051 * 109.36265 * 183.18598 * 4 3 2 6 6 N 1.46950 * 109.36695 * 301.59619 * 5 4 3 7 7 C 1.46899 * 111.00175 * 183.19167 * 6 5 4 8 8 C 1.50701 * 109.47044 * 66.04557 * 7 6 5 9 9 H 1.07999 * 120.00312 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99930 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99888 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99964 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47143 * 59.99877 * 12 10 8 14 14 H 1.48502 * 109.46981 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46970 * 299.99759 * 12 10 8 16 16 C 1.46956 * 110.88187 * 59.32281 * 6 5 4 17 17 C 1.46963 * 110.99746 * 189.84983 * 3 2 1 18 18 H 1.09003 * 109.48613 * 296.77787 * 17 3 2 19 19 C 1.52992 * 109.49055 * 56.84361 * 17 3 2 20 20 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47140 * 299.99933 * 1 2 3 22 22 H 1.08994 * 109.46964 * 60.00248 * 1 2 3 23 23 H 1.09000 * 109.46619 * 240.00003 * 2 1 3 24 24 H 1.08999 * 109.47082 * 120.00486 * 2 1 3 25 25 H 1.09000 * 109.48237 * 303.15282 * 4 3 2 26 26 H 1.08993 * 109.48945 * 63.19329 * 4 3 2 27 27 H 1.09003 * 109.49056 * 61.56379 * 5 4 3 28 28 H 1.09004 * 109.48450 * 181.62376 * 5 4 3 29 29 H 1.08997 * 109.47297 * 186.04458 * 7 6 5 30 30 H 1.08998 * 109.47016 * 306.04456 * 7 6 5 31 31 H 0.96999 * 120.00113 * 179.97438 * 11 10 8 32 32 H 1.08994 * 109.48748 * 60.64632 * 16 6 5 33 33 H 1.09003 * 109.49140 * 180.69625 * 16 6 5 34 34 H 1.08997 * 109.47437 * 60.00192 * 19 17 3 35 35 H 1.09006 * 109.46864 * 180.02562 * 19 17 3 36 36 H 1.09001 * 109.47185 * 300.00098 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6702 2.0671 1.2538 5 6 2.1267 3.5262 1.1820 6 7 3.5766 3.5721 0.9473 7 6 4.0664 4.9571 0.9473 8 6 3.9073 5.5461 2.3253 9 1 3.4844 4.9513 3.1214 10 6 4.3009 6.8448 2.5696 11 7 4.8145 7.5696 1.5998 12 14 4.1031 7.5751 4.2774 13 1 4.8859 6.7737 5.2522 14 1 4.5972 8.9755 4.2771 15 1 2.6685 7.5570 4.6604 16 6 3.9262 2.8899 -0.3065 17 6 3.4697 1.4308 -0.2347 18 1 3.9864 0.9279 0.5827 19 6 3.7957 0.7285 -1.5542 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.5905 2.0306 1.3988 26 1 2.1661 1.5712 2.0881 27 1 1.6100 4.0291 0.3645 28 1 1.8943 4.0266 2.1221 29 1 5.1193 4.9702 0.6659 30 1 3.4918 5.5456 0.2321 31 1 5.0911 8.4834 1.7715 32 1 3.4299 3.3856 -1.1407 33 1 5.0059 2.9267 -0.4517 34 1 3.2795 1.2324 -2.3713 35 1 4.8713 0.7623 -1.7277 36 1 3.4687 -0.3101 -1.5035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082478111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:11 Heat of formation + Delta-G solvation = 4.860420 kcal Electronic energy + Delta-G solvation = -14797.435926 eV Core-core repulsion = 12509.333764 eV Total energy + Delta-G solvation = -2288.102162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.05559 -35.44914 -32.76911 -32.21427 -30.37416 -27.38629 -26.86645 -24.56437 -22.52719 -21.60270 -20.47129 -19.11185 -16.32518 -15.80605 -15.22445 -14.62956 -14.41214 -14.13689 -13.78661 -13.46953 -13.19649 -12.36757 -12.06930 -11.92172 -11.69792 -11.62553 -11.59341 -11.08274 -10.84429 -10.78847 -10.58844 -10.55798 -10.23472 -10.11805 -9.62528 -9.13984 -8.41193 -8.03370 -7.18289 -6.00229 -4.01678 3.34856 3.38685 3.41695 4.12571 4.44096 4.92532 5.06085 5.21255 5.33130 5.34451 5.44149 5.56918 5.58266 5.73996 5.84710 5.89427 5.92056 6.02487 6.05295 6.09095 6.19679 6.28911 6.32314 6.55483 6.67173 6.74554 7.26310 7.36543 7.40954 7.46179 7.82748 8.12631 8.25176 8.59033 9.05636 9.62324 11.10670 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048330 B = 0.007263 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.213061 B = 3854.077137 C = 4265.158730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.536 5.536 4 C 0.056 3.944 5 C 0.068 3.932 6 N -0.540 5.540 7 C 0.194 3.806 8 C -0.508 4.508 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.898 3.102 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.063 3.937 17 C 0.084 3.916 18 H 0.045 0.955 19 C -0.145 4.145 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.085 0.915 29 H 0.029 0.971 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 -13.154 -3.849 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.262 5.262 4 C -0.072 4.072 5 C -0.061 4.061 6 N -0.265 5.265 7 C 0.069 3.931 8 C -0.546 4.546 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.726 3.274 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.066 4.066 17 C -0.025 4.025 18 H 0.063 0.937 19 C -0.203 4.203 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.442 -12.954 -3.883 14.578 hybrid contribution -0.025 0.535 0.892 1.040 sum -5.468 -12.420 -2.990 13.895 Atomic orbital electron populations 1.21790 0.95287 1.00939 1.02488 1.22136 0.95777 0.89903 1.00489 1.62221 1.13835 1.14704 1.35405 1.22272 0.99663 0.95562 0.89676 1.21989 0.89030 0.93581 1.01521 1.62261 1.12401 1.20317 1.31507 1.19691 0.95257 0.81182 0.96981 1.21126 1.40965 0.96944 0.95595 0.91996 1.24991 0.95388 0.97061 0.97162 1.69951 1.42573 1.09386 1.31941 0.86560 0.78435 0.77962 0.84438 1.20200 1.21351 1.20289 1.22085 0.99735 0.92412 0.92356 1.21668 0.87333 0.96838 0.96658 0.93747 1.21887 1.01262 0.99732 0.97410 0.92802 0.92663 0.92029 0.90647 0.95428 0.90967 0.94569 0.95385 0.89657 0.95265 0.99087 0.92884 0.95176 0.91179 0.91994 0.92202 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.84 37.16 0.37 -1.24 16 2 C 0.04 0.56 5.44 -3.83 -0.02 0.54 16 3 N -0.54 -8.35 4.53 -226.50 -1.03 -9.37 16 4 C 0.06 0.94 5.41 -3.77 -0.02 0.92 16 5 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 6 N -0.54 -12.18 4.70 -235.91 -1.11 -13.29 16 7 C 0.19 5.20 4.72 -4.98 -0.02 5.18 16 8 C -0.51 -14.50 8.47 -34.44 -0.29 -14.79 16 9 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 12 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.06 1.21 4.89 -3.77 -0.02 1.19 16 17 C 0.08 1.33 2.56 -67.65 -0.17 1.16 16 18 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.14 -1.84 8.89 37.15 0.33 -1.51 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 0.86 5.74 -51.93 -0.30 0.56 16 24 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 25 H 0.07 1.07 6.33 -51.93 -0.33 0.74 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.85 6.78 -51.93 -0.35 1.49 16 29 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.60 6.15 -51.93 -0.32 0.28 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -29.96 278.88 -8.39 -38.35 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -6.21 Total: -4.69 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 0.03 Total: -5.70 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -1.40 Total: -49.00 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.96 -8.39 -38.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.212 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds