Wall clock time and date at job start Sun Mar 29 2020 21:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.47050 * 2 1 4 4 C 1.46956 * 111.00196 * 66.05103 * 3 2 1 5 5 C 1.53051 * 109.36265 * 183.18598 * 4 3 2 6 6 N 1.46950 * 109.36695 * 301.59619 * 5 4 3 7 7 C 1.46899 * 111.00175 * 183.19167 * 6 5 4 8 8 C 1.50701 * 109.47044 * 66.04557 * 7 6 5 9 9 H 1.07999 * 120.00312 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99930 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99888 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99964 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47143 * 59.99877 * 12 10 8 14 14 H 1.48502 * 109.46981 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46970 * 299.99759 * 12 10 8 16 16 C 1.46956 * 110.88187 * 59.32281 * 6 5 4 17 17 C 1.46963 * 110.99746 * 189.84983 * 3 2 1 18 18 H 1.09003 * 109.48613 * 296.77787 * 17 3 2 19 19 C 1.52992 * 109.49055 * 56.84361 * 17 3 2 20 20 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47140 * 299.99933 * 1 2 3 22 22 H 1.08994 * 109.46964 * 60.00248 * 1 2 3 23 23 H 1.09000 * 109.46619 * 240.00003 * 2 1 3 24 24 H 1.08999 * 109.47082 * 120.00486 * 2 1 3 25 25 H 1.09000 * 109.48237 * 303.15282 * 4 3 2 26 26 H 1.08993 * 109.48945 * 63.19329 * 4 3 2 27 27 H 1.09003 * 109.49056 * 61.56379 * 5 4 3 28 28 H 1.09004 * 109.48450 * 181.62376 * 5 4 3 29 29 H 1.08997 * 109.47297 * 186.04458 * 7 6 5 30 30 H 1.08998 * 109.47016 * 306.04456 * 7 6 5 31 31 H 0.96999 * 120.00113 * 179.97438 * 11 10 8 32 32 H 1.08994 * 109.48748 * 60.64632 * 16 6 5 33 33 H 1.09003 * 109.49140 * 180.69625 * 16 6 5 34 34 H 1.08997 * 109.47437 * 60.00192 * 19 17 3 35 35 H 1.09006 * 109.46864 * 180.02562 * 19 17 3 36 36 H 1.09001 * 109.47185 * 300.00098 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6702 2.0671 1.2538 5 6 2.1267 3.5262 1.1820 6 7 3.5766 3.5721 0.9473 7 6 4.0664 4.9571 0.9473 8 6 3.9073 5.5461 2.3253 9 1 3.4844 4.9513 3.1214 10 6 4.3009 6.8448 2.5696 11 7 4.8145 7.5696 1.5998 12 14 4.1031 7.5751 4.2774 13 1 4.8859 6.7737 5.2522 14 1 4.5972 8.9755 4.2771 15 1 2.6685 7.5570 4.6604 16 6 3.9262 2.8899 -0.3065 17 6 3.4697 1.4308 -0.2347 18 1 3.9864 0.9279 0.5827 19 6 3.7957 0.7285 -1.5542 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.5905 2.0306 1.3988 26 1 2.1661 1.5712 2.0881 27 1 1.6100 4.0291 0.3645 28 1 1.8943 4.0266 2.1221 29 1 5.1193 4.9702 0.6659 30 1 3.4918 5.5456 0.2321 31 1 5.0911 8.4834 1.7715 32 1 3.4299 3.3856 -1.1407 33 1 5.0059 2.9267 -0.4517 34 1 3.2795 1.2324 -2.3713 35 1 4.8713 0.7623 -1.7277 36 1 3.4687 -0.3101 -1.5035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082478111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:10 Heat of formation + Delta-G solvation = -16.409254 kcal Electronic energy + Delta-G solvation = -14798.358249 eV Core-core repulsion = 12509.333764 eV Total energy + Delta-G solvation = -2289.024484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47104 -37.07079 -34.69849 -33.65593 -31.72158 -29.23450 -28.18969 -26.22508 -24.25984 -22.83973 -22.06629 -20.54944 -18.50775 -17.22431 -16.64252 -16.34754 -16.01261 -15.39935 -15.30897 -15.08924 -14.59368 -14.17534 -13.44565 -13.23021 -13.16703 -12.89202 -12.79322 -12.70860 -12.56752 -12.42105 -12.14442 -12.06764 -11.94775 -11.55412 -11.36089 -11.02686 -10.62866 -9.28919 -9.05534 -8.22053 -6.33119 1.40098 1.43854 1.51873 2.39250 2.92554 3.09773 3.26119 3.88921 4.04403 4.08906 4.29576 4.32860 4.40294 4.54824 4.61594 4.64946 4.71252 4.79595 4.83327 4.92553 4.96768 5.06534 5.10704 5.17909 5.19848 5.26238 5.35061 5.42755 5.61798 6.00430 6.12626 6.17644 6.35592 6.60188 6.82259 7.36707 8.89212 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048330 B = 0.007263 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.213061 B = 3854.077137 C = 4265.158730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 N -0.545 5.545 4 C 0.068 3.932 5 C 0.069 3.931 6 N -0.547 5.547 7 C 0.209 3.791 8 C -0.527 4.527 9 H 0.063 0.937 10 C 0.001 3.999 11 N -0.935 5.935 12 Si 0.973 3.027 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.266 1.266 16 C 0.061 3.939 17 C 0.089 3.911 18 H 0.038 0.962 19 C -0.136 4.136 20 H 0.077 0.923 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.092 0.908 24 H 0.031 0.969 25 H 0.095 0.905 26 H 0.033 0.967 27 H 0.014 0.986 28 H 0.068 0.932 29 H 0.003 0.997 30 H -0.041 1.041 31 H 0.265 0.735 32 H 0.019 0.981 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -14.876 -3.218 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.271 5.271 4 C -0.060 4.060 5 C -0.060 4.060 6 N -0.272 5.272 7 C 0.083 3.917 8 C -0.565 4.565 9 H 0.081 0.919 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.797 3.203 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.068 4.068 17 C -0.020 4.020 18 H 0.056 0.944 19 C -0.194 4.194 20 H 0.096 0.904 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.049 0.951 25 H 0.113 0.887 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.086 0.914 29 H 0.021 0.979 30 H -0.024 1.024 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.322 -14.711 -3.262 16.341 hybrid contribution 0.246 1.049 0.635 1.251 sum -6.076 -13.662 -2.627 15.181 Atomic orbital electron populations 1.21771 0.93962 1.02380 1.02010 1.22263 0.96828 0.87766 1.01416 1.62234 1.13445 1.16960 1.34476 1.22118 1.00843 0.92708 0.90328 1.21980 0.87572 0.96426 0.99974 1.62211 1.13830 1.17577 1.33537 1.19346 0.93270 0.83407 0.95682 1.21416 1.41296 0.97604 0.96151 0.91900 1.25958 0.94645 0.97391 1.01686 1.70087 1.43236 1.09830 1.34375 0.85391 0.78946 0.77140 0.78872 1.19259 1.20678 1.19122 1.22199 0.99694 0.94501 0.90367 1.21612 0.87706 0.94181 0.98460 0.94369 1.21832 1.02025 1.00514 0.95044 0.90450 0.93120 0.92501 0.89017 0.95083 0.88665 0.94916 0.96778 0.91350 0.97877 1.02367 0.92593 0.96269 0.91394 0.92209 0.91230 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.84 71.98 0.71 -1.97 16 2 C 0.04 0.97 5.44 86.31 0.47 1.44 16 3 N -0.54 -16.00 4.53 -870.50 -3.94 -19.94 16 4 C 0.07 2.20 5.41 86.31 0.47 2.67 16 5 C 0.07 2.88 5.43 86.31 0.47 3.35 16 6 N -0.55 -25.43 4.70 -900.29 -4.23 -29.66 16 7 C 0.21 11.78 4.72 85.56 0.40 12.18 16 8 C -0.53 -30.84 8.47 25.60 0.22 -30.62 16 9 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 10 C 0.00 0.07 5.46 84.66 0.46 0.53 16 11 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 12 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 16 C 0.06 2.39 4.89 86.31 0.42 2.81 16 17 C 0.09 2.73 2.56 44.92 0.12 2.84 16 18 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 19 C -0.14 -3.12 8.89 71.98 0.64 -2.48 16 20 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 0.99 6.49 -2.39 -0.02 0.97 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.72 5.74 -2.39 -0.01 1.71 16 24 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 25 H 0.10 2.64 6.33 -2.39 -0.02 2.63 16 26 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 3.04 6.78 -2.39 -0.02 3.02 16 29 H 0.00 0.19 8.03 -2.39 -0.02 0.17 16 30 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 31 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.08 1.44 6.15 -2.39 -0.01 1.42 16 Total: -1.00 -65.55 278.88 -0.47 -66.02 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.02 Total: 3.15 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 4.37 Total: -9.25 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -7.89 Total: -106.89 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.55 -0.47 -66.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.608 kcal (2) G-P(sol) polarization free energy of solvation -65.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds